Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC21.14■□□□□ 0.97
COL18A1P39060 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL18A1P39060 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
COL18A1P39060 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL18A1P39060 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC21.14■□□□□ 0.97
COL18A1P39060 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
COL18A1P39060 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL18A1P39060 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
COL18A1P39060 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
COL18A1P39060 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL18A1P39060 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC21.13■□□□□ 0.97
COL18A1P39060 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
COL18A1P39060 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 PHKG1P2-201ENST00000457537 863 ntBASIC21.13■□□□□ 0.97
COL18A1P39060 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC21.13■□□□□ 0.97
COL18A1P39060 AP001063.1-201ENST00000568332 529 ntBASIC21.13■□□□□ 0.97
COL18A1P39060 AC103810.3-201ENST00000583567 96 ntBASIC21.13■□□□□ 0.97
COL18A1P39060 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
COL18A1P39060 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC21.13■□□□□ 0.97
COL18A1P39060 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC21.13■□□□□ 0.97
COL18A1P39060 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
COL18A1P39060 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC21.13■□□□□ 0.97
COL18A1P39060 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 BRF1-202ENST00000379932 884 ntTSL 5 BASIC21.13■□□□□ 0.97
COL18A1P39060 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC21.13■□□□□ 0.97
COL18A1P39060 AC007969.1-201ENST00000433675 447 ntBASIC21.13■□□□□ 0.97
COL18A1P39060 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC21.13■□□□□ 0.97
COL18A1P39060 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 PFN1P12-201ENST00000455938 534 ntBASIC21.13■□□□□ 0.97
COL18A1P39060 DRD5P1-201ENST00000456605 1438 ntBASIC21.13■□□□□ 0.97
COL18A1P39060 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
COL18A1P39060 KLK3-211ENST00000597483 810 ntTSL 2 BASIC21.13■□□□□ 0.97
COL18A1P39060 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL18A1P39060 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.12■□□□□ 0.97
COL18A1P39060 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL18A1P39060 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC21.12■□□□□ 0.97
COL18A1P39060 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC21.12■□□□□ 0.97
COL18A1P39060 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL18A1P39060 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL18A1P39060 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL18A1P39060 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL18A1P39060 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC21.12■□□□□ 0.97
COL18A1P39060 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC21.12■□□□□ 0.97
COL18A1P39060 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL18A1P39060 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL18A1P39060 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
COL18A1P39060 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
COL18A1P39060 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL18A1P39060 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL18A1P39060 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL18A1P39060 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL18A1P39060 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL18A1P39060 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC21.12■□□□□ 0.97
COL18A1P39060 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC21.12■□□□□ 0.97
COL18A1P39060 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC21.12■□□□□ 0.97
COL18A1P39060 IFT20-206ENST00000578122 834 ntTSL 2 BASIC21.12■□□□□ 0.97
COL18A1P39060 IFT20-208ENST00000578985 831 ntTSL 3 BASIC21.12■□□□□ 0.97
COL18A1P39060 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL18A1P39060 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC21.12■□□□□ 0.97
COL18A1P39060 AMT-233ENST00000636522 1620 ntTSL 2 BASIC21.12■□□□□ 0.97
COL18A1P39060 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
COL18A1P39060 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
COL18A1P39060 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC21.12■□□□□ 0.97
COL18A1P39060 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL18A1P39060 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
COL18A1P39060 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL18A1P39060 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL18A1P39060 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL18A1P39060 AGER-203ENST00000375065 665 ntTSL 2 BASIC21.11■□□□□ 0.97
COL18A1P39060 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC21.11■□□□□ 0.97
COL18A1P39060 AC025279.2-201ENST00000569730 653 ntBASIC21.11■□□□□ 0.97
COL18A1P39060 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
COL18A1P39060 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC21.11■□□□□ 0.97
COL18A1P39060 AC005695.3-201ENST00000614522 232 ntBASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms