Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PTPN4P29074 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN4P29074 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
PTPN4P29074 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN4P29074 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.51■□□□□ 0.23
PTPN4P29074 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
PTPN4P29074 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.51■□□□□ 0.23
PTPN4P29074 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN4P29074 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN4P29074 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.51■□□□□ 0.23
PTPN4P29074 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN4P29074 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN4P29074 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.51■□□□□ 0.23
PTPN4P29074 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN4P29074 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PTPN4P29074 AC073621.1-201ENST00000392730 636 ntBASIC16.51■□□□□ 0.23
PTPN4P29074 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.51■□□□□ 0.23
PTPN4P29074 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.51■□□□□ 0.23
PTPN4P29074 AC007967.2-201ENST00000432613 625 ntBASIC16.51■□□□□ 0.23
PTPN4P29074 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.51■□□□□ 0.23
PTPN4P29074 HLA-J-202ENST00000469281 1241 ntBASIC16.51■□□□□ 0.23
PTPN4P29074 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.51■□□□□ 0.23
PTPN4P29074 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.51■□□□□ 0.23
PTPN4P29074 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN4P29074 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.51■□□□□ 0.23
PTPN4P29074 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC16.51■□□□□ 0.23
PTPN4P29074 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.51■□□□□ 0.23
PTPN4P29074 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN4P29074 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
PTPN4P29074 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.51■□□□□ 0.23
PTPN4P29074 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN4P29074 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN4P29074 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PTPN4P29074 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.51■□□□□ 0.23
PTPN4P29074 AL049757.1-201ENST00000616842 1596 ntBASIC16.51■□□□□ 0.23
PTPN4P29074 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN4P29074 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PTPN4P29074 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
PTPN4P29074 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.5■□□□□ 0.23
PTPN4P29074 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
PTPN4P29074 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
PTPN4P29074 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
PTPN4P29074 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.5■□□□□ 0.23
PTPN4P29074 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.5■□□□□ 0.23
PTPN4P29074 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.5■□□□□ 0.23
PTPN4P29074 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.5■□□□□ 0.23
PTPN4P29074 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.5■□□□□ 0.23
PTPN4P29074 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
PTPN4P29074 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 DNAJB3-201ENST00000446806 729 ntBASIC16.5■□□□□ 0.23
PTPN4P29074 AC092183.1-201ENST00000469884 875 ntBASIC16.5■□□□□ 0.23
PTPN4P29074 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
PTPN4P29074 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.5■□□□□ 0.23
PTPN4P29074 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
PTPN4P29074 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.5■□□□□ 0.23
PTPN4P29074 MIR3687-2-201ENST00000577708 61 ntBASIC16.5■□□□□ 0.23
PTPN4P29074 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.5■□□□□ 0.23
PTPN4P29074 AL139424.1-201ENST00000607572 797 ntBASIC16.5■□□□□ 0.23
PTPN4P29074 MIR3687-1-201ENST00000614492 61 ntBASIC16.5■□□□□ 0.23
PTPN4P29074 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
PTPN4P29074 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.5■□□□□ 0.23
PTPN4P29074 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.5■□□□□ 0.23
PTPN4P29074 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
PTPN4P29074 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
PTPN4P29074 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.5■□□□□ 0.23
PTPN4P29074 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.5■□□□□ 0.23
PTPN4P29074 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PTPN4P29074 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.49■□□□□ 0.23
PTPN4P29074 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.49■□□□□ 0.23
PTPN4P29074 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 GPR89P-201ENST00000407924 1495 ntBASIC16.49■□□□□ 0.23
PTPN4P29074 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.49■□□□□ 0.23
PTPN4P29074 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PTPN4P29074 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms