Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
BDNFP23560 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.21■□□□□ 0.35
BDNFP23560 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
BDNFP23560 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.21■□□□□ 0.35
BDNFP23560 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
BDNFP23560 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.21■□□□□ 0.35
BDNFP23560 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 AL035456.1-201ENST00000456064 1369 ntBASIC17.21■□□□□ 0.35
BDNFP23560 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.21■□□□□ 0.35
BDNFP23560 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.21■□□□□ 0.35
BDNFP23560 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.21■□□□□ 0.35
BDNFP23560 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.21■□□□□ 0.35
BDNFP23560 RNA5SP421-201ENST00000516864 134 ntBASIC17.21■□□□□ 0.35
BDNFP23560 AC027369.6-201ENST00000525520 931 ntBASIC17.21■□□□□ 0.35
BDNFP23560 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.21■□□□□ 0.35
BDNFP23560 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.21■□□□□ 0.35
BDNFP23560 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.21■□□□□ 0.35
BDNFP23560 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.21■□□□□ 0.35
BDNFP23560 SPDYE12P-201ENST00000618416 771 ntBASIC17.21■□□□□ 0.35
BDNFP23560 AC073592.8-201ENST00000624126 511 ntBASIC17.21■□□□□ 0.35
BDNFP23560 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
BDNFP23560 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
BDNFP23560 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.21■□□□□ 0.35
BDNFP23560 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
BDNFP23560 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.34
BDNFP23560 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
BDNFP23560 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
BDNFP23560 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
BDNFP23560 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
BDNFP23560 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
BDNFP23560 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BDNFP23560 ME2P1-201ENST00000426028 1970 ntBASIC17.2■□□□□ 0.34
BDNFP23560 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BDNFP23560 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
BDNFP23560 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.2■□□□□ 0.34
BDNFP23560 GRAMD4P3-201ENST00000621665 1669 ntBASIC17.2■□□□□ 0.34
BDNFP23560 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BDNFP23560 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
BDNFP23560 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BDNFP23560 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
BDNFP23560 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BDNFP23560 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
BDNFP23560 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
BDNFP23560 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
BDNFP23560 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
BDNFP23560 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.2■□□□□ 0.34
BDNFP23560 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
BDNFP23560 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.2■□□□□ 0.34
BDNFP23560 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
BDNFP23560 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
BDNFP23560 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.2■□□□□ 0.34
BDNFP23560 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.2■□□□□ 0.34
BDNFP23560 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC17.2■□□□□ 0.34
BDNFP23560 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC17.2■□□□□ 0.34
BDNFP23560 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.2■□□□□ 0.34
BDNFP23560 AL138828.2-201ENST00000615812 383 ntBASIC17.2■□□□□ 0.34
BDNFP23560 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
BDNFP23560 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
BDNFP23560 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.2■□□□□ 0.34
BDNFP23560 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
BDNFP23560 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
BDNFP23560 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
BDNFP23560 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
BDNFP23560 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.19■□□□□ 0.34
BDNFP23560 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.19■□□□□ 0.34
BDNFP23560 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
BDNFP23560 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.19■□□□□ 0.34
BDNFP23560 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.19■□□□□ 0.34
BDNFP23560 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
BDNFP23560 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.19■□□□□ 0.34
BDNFP23560 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms