Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
VIMP08670 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.53■□□□□ 0.24
VIMP08670 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC16.53■□□□□ 0.24
VIMP08670 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
VIMP08670 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.53■□□□□ 0.24
VIMP08670 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
VIMP08670 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.53■□□□□ 0.24
VIMP08670 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.53■□□□□ 0.24
VIMP08670 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.53■□□□□ 0.24
VIMP08670 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
VIMP08670 AC073592.5-201ENST00000624854 528 ntBASIC16.53■□□□□ 0.24
VIMP08670 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.53■□□□□ 0.24
VIMP08670 AL031432.5-201ENST00000641059 760 ntBASIC16.53■□□□□ 0.24
VIMP08670 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.53■□□□□ 0.24
VIMP08670 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC16.53■□□□□ 0.24
VIMP08670 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
VIMP08670 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC16.53■□□□□ 0.24
VIMP08670 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC16.53■□□□□ 0.24
VIMP08670 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.53■□□□□ 0.24
VIMP08670 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.53■□□□□ 0.24
VIMP08670 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VIMP08670 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VIMP08670 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
VIMP08670 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VIMP08670 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.52■□□□□ 0.24
VIMP08670 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
VIMP08670 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC16.52■□□□□ 0.24
VIMP08670 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC16.52■□□□□ 0.24
VIMP08670 AC026748.1-201ENST00000624349 3251 ntBASIC16.52■□□□□ 0.24
VIMP08670 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VIMP08670 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
VIMP08670 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
VIMP08670 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
VIMP08670 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.24
VIMP08670 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VIMP08670 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
VIMP08670 ACTG1P4-201ENST00000425123 1122 ntBASIC16.52■□□□□ 0.24
VIMP08670 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.52■□□□□ 0.24
VIMP08670 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VIMP08670 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC16.52■□□□□ 0.24
VIMP08670 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VIMP08670 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VIMP08670 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.52■□□□□ 0.24
VIMP08670 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VIMP08670 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VIMP08670 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VIMP08670 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VIMP08670 POLL-206ENST00000370172 2308 ntTSL 2 BASIC16.52■□□□□ 0.23
VIMP08670 PCGF3-213ENST00000620529 1899 ntBASIC16.52■□□□□ 0.23
VIMP08670 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VIMP08670 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.52■□□□□ 0.23
VIMP08670 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
VIMP08670 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VIMP08670 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
VIMP08670 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VIMP08670 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VIMP08670 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VIMP08670 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
VIMP08670 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.51■□□□□ 0.23
VIMP08670 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.51■□□□□ 0.23
VIMP08670 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VIMP08670 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC16.51■□□□□ 0.23
VIMP08670 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.51■□□□□ 0.23
VIMP08670 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC16.51■□□□□ 0.23
VIMP08670 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VIMP08670 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.51■□□□□ 0.23
VIMP08670 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
VIMP08670 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC16.51■□□□□ 0.23
VIMP08670 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VIMP08670 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC16.51■□□□□ 0.23
VIMP08670 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VIMP08670 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.51■□□□□ 0.23
VIMP08670 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VIMP08670 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.51■□□□□ 0.23
VIMP08670 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
VIMP08670 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VIMP08670 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
VIMP08670 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.51■□□□□ 0.23
VIMP08670 NUS1P1-201ENST00000446295 882 ntBASIC16.51■□□□□ 0.23
VIMP08670 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.51■□□□□ 0.23
VIMP08670 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VIMP08670 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.51■□□□□ 0.23
VIMP08670 AL138966.2-201ENST00000621997 464 ntBASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms