Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHOX2O60902 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.41■□□□□ 0.22
SHOX2O60902 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHOX2O60902 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
SHOX2O60902 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SHOX2O60902 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.41■□□□□ 0.22
SHOX2O60902 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.41■□□□□ 0.22
SHOX2O60902 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.41■□□□□ 0.22
SHOX2O60902 RASA4DP-201ENST00000460726 1199 ntBASIC16.41■□□□□ 0.22
SHOX2O60902 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.41■□□□□ 0.22
SHOX2O60902 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHOX2O60902 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.41■□□□□ 0.22
SHOX2O60902 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHOX2O60902 AL138831.2-201ENST00000606564 490 ntBASIC16.41■□□□□ 0.22
SHOX2O60902 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.41■□□□□ 0.22
SHOX2O60902 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHOX2O60902 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHOX2O60902 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.41■□□□□ 0.22
SHOX2O60902 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.41■□□□□ 0.22
SHOX2O60902 USP28-214ENST00000545540 3431 ntTSL 2 BASIC16.41■□□□□ 0.22
SHOX2O60902 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHOX2O60902 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHOX2O60902 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SHOX2O60902 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SHOX2O60902 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SHOX2O60902 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.4■□□□□ 0.22
SHOX2O60902 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
SHOX2O60902 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SHOX2O60902 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC16.4■□□□□ 0.22
SHOX2O60902 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.4■□□□□ 0.22
SHOX2O60902 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.4■□□□□ 0.22
SHOX2O60902 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.4■□□□□ 0.22
SHOX2O60902 TERC-201ENST00000602385 541 ntBASIC16.4■□□□□ 0.22
SHOX2O60902 AD001527.2-201ENST00000622994 785 ntBASIC16.4■□□□□ 0.22
SHOX2O60902 AC141257.4-201ENST00000634557 245 ntBASIC16.4■□□□□ 0.22
SHOX2O60902 AC136944.6-201ENST00000634818 245 ntBASIC16.4■□□□□ 0.22
SHOX2O60902 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.4■□□□□ 0.22
SHOX2O60902 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
SHOX2O60902 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC16.4■□□□□ 0.22
SHOX2O60902 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SHOX2O60902 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
SHOX2O60902 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 OSBPL7-211ENST00000613735 2836 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SHOX2O60902 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
SHOX2O60902 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.4■□□□□ 0.22
SHOX2O60902 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.22
SHOX2O60902 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
SHOX2O60902 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.22
SHOX2O60902 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SHOX2O60902 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 REXO1L2P-201ENST00000425429 2069 ntBASIC16.39■□□□□ 0.21
SHOX2O60902 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.39■□□□□ 0.21
SHOX2O60902 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.39■□□□□ 0.21
SHOX2O60902 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
SHOX2O60902 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
SHOX2O60902 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SHOX2O60902 REXO1L1P-202ENST00000608646 1974 ntBASIC16.39■□□□□ 0.21
SHOX2O60902 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.39■□□□□ 0.21
SHOX2O60902 AC136759.1-202ENST00000530858 2194 ntBASIC16.39■□□□□ 0.21
SHOX2O60902 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
SHOX2O60902 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.39■□□□□ 0.21
SHOX2O60902 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SHOX2O60902 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.39■□□□□ 0.21
SHOX2O60902 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.39■□□□□ 0.21
SHOX2O60902 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC16.39■□□□□ 0.21
SHOX2O60902 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SHOX2O60902 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms