Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 RNF216P1-203ENST00000404404 2427 ntBASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
TMX2-CTNND1H3BSU7 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 TOP3BP1-201ENST00000420768 1380 ntBASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 GPS2P2-201ENST00000430745 888 ntBASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 AL512638.1-201ENST00000457493 794 ntBASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 TERF1P3-201ENST00000505638 1227 ntBASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 AC087641.1-201ENST00000557561 1021 ntBASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 AL390955.2-201ENST00000603032 514 ntBASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TMX2-CTNND1H3BSU7 AC092068.3-201ENST00000587894 2016 ntBASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 FAM207CP-201ENST00000443486 507 ntBASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 AL031055.1-201ENST00000606362 631 ntBASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 AL158211.3-201ENST00000607385 239 ntBASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TMX2-CTNND1H3BSU7 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms