Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
TCRBV7S3A2A0A539 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.64■□□□□ 0.26
TCRBV7S3A2A0A539 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 SLC25A6P4-201ENST00000586535 553 ntBASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.64■□□□□ 0.25
TCRBV7S3A2A0A539 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 FAAHP1-202ENST00000446499 1238 ntBASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 AC009078.2-202ENST00000463353 338 ntBASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 AC096734.2-201ENST00000562054 433 ntBASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 AL009183.1-201ENST00000603760 355 ntBASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TCRBV7S3A2A0A539 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 AP001005.1-201ENST00000571755 1248 ntBASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TCRBV7S3A2A0A539 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms