Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.08□□□□□ -0.16
ABCA4P78363 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.08□□□□□ -0.16
ABCA4P78363 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
ABCA4P78363 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC14.08□□□□□ -0.16
ABCA4P78363 QPRT-203ENST00000562473 579 ntTSL 3 BASIC14.08□□□□□ -0.16
ABCA4P78363 WASH4P-201ENST00000564273 1246 ntBASIC14.08□□□□□ -0.16
ABCA4P78363 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.08□□□□□ -0.16
ABCA4P78363 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
ABCA4P78363 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.08□□□□□ -0.16
ABCA4P78363 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ABCA4P78363 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
ABCA4P78363 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
ABCA4P78363 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ABCA4P78363 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
ABCA4P78363 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
ABCA4P78363 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
ABCA4P78363 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ABCA4P78363 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC14.08□□□□□ -0.16
ABCA4P78363 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ABCA4P78363 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC14.08□□□□□ -0.16
ABCA4P78363 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC14.08□□□□□ -0.16
ABCA4P78363 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
ABCA4P78363 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
ABCA4P78363 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC14.08□□□□□ -0.16
ABCA4P78363 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
ABCA4P78363 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
ABCA4P78363 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.07□□□□□ -0.16
ABCA4P78363 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
ABCA4P78363 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC14.07□□□□□ -0.16
ABCA4P78363 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.07□□□□□ -0.16
ABCA4P78363 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.07□□□□□ -0.16
ABCA4P78363 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.07□□□□□ -0.16
ABCA4P78363 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.07□□□□□ -0.16
ABCA4P78363 AC004790.1-201ENST00000612686 536 ntBASIC14.07□□□□□ -0.16
ABCA4P78363 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC14.07□□□□□ -0.16
ABCA4P78363 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
ABCA4P78363 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC14.07□□□□□ -0.16
ABCA4P78363 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 PC-204ENST00000524491 1714 ntTSL 2 BASIC14.07□□□□□ -0.16
ABCA4P78363 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
ABCA4P78363 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.07□□□□□ -0.16
ABCA4P78363 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
ABCA4P78363 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.07□□□□□ -0.16
ABCA4P78363 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.07□□□□□ -0.16
ABCA4P78363 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14.07□□□□□ -0.16
ABCA4P78363 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
ABCA4P78363 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
ABCA4P78363 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC14.06□□□□□ -0.16
ABCA4P78363 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
ABCA4P78363 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ABCA4P78363 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
ABCA4P78363 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ABCA4P78363 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC14.06□□□□□ -0.16
ABCA4P78363 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
ABCA4P78363 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
ABCA4P78363 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.06□□□□□ -0.16
ABCA4P78363 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC14.06□□□□□ -0.16
ABCA4P78363 AC114501.2-201ENST00000439631 535 ntBASIC14.06□□□□□ -0.16
ABCA4P78363 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.06□□□□□ -0.16
ABCA4P78363 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC14.06□□□□□ -0.16
ABCA4P78363 MPDU1-223ENST00000582151 728 ntBASIC14.06□□□□□ -0.16
ABCA4P78363 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.06□□□□□ -0.16
ABCA4P78363 AC007431.3-201ENST00000623221 587 ntBASIC14.06□□□□□ -0.16
ABCA4P78363 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC14.06□□□□□ -0.16
ABCA4P78363 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
ABCA4P78363 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
ABCA4P78363 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
ABCA4P78363 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
ABCA4P78363 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ABCA4P78363 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
ABCA4P78363 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC14.06□□□□□ -0.16
ABCA4P78363 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
ABCA4P78363 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
ABCA4P78363 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC14.06□□□□□ -0.16
ABCA4P78363 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC14.06□□□□□ -0.16
ABCA4P78363 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
ABCA4P78363 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ABCA4P78363 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ABCA4P78363 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.06□□□□□ -0.16
ABCA4P78363 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
ABCA4P78363 AP005482.1-201ENST00000563722 1273 ntBASIC14.06□□□□□ -0.16
ABCA4P78363 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ABCA4P78363 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms