Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.17■□□□□ 0.02
RNF4P78317 U82695.1-201ENST00000635752 1889 ntBASIC15.17■□□□□ 0.02
RNF4P78317 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.17■□□□□ 0.02
RNF4P78317 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 FAM220BP-201ENST00000377689 816 ntBASIC15.17■□□□□ 0.02
RNF4P78317 HLA-H-201ENST00000383620 1096 ntBASIC15.17■□□□□ 0.02
RNF4P78317 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.17■□□□□ 0.02
RNF4P78317 AL645939.2-201ENST00000427340 991 ntBASIC15.17■□□□□ 0.02
RNF4P78317 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.17■□□□□ 0.02
RNF4P78317 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.17■□□□□ 0.02
RNF4P78317 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.17■□□□□ 0.02
RNF4P78317 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.17■□□□□ 0.02
RNF4P78317 RARRES2P9-201ENST00000565168 469 ntBASIC15.17■□□□□ 0.02
RNF4P78317 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 AC005052.1-201ENST00000625181 2492 ntBASIC15.17■□□□□ 0.02
RNF4P78317 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RNF4P78317 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.17■□□□□ 0.02
RNF4P78317 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
RNF4P78317 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.16■□□□□ 0.02
RNF4P78317 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.16■□□□□ 0.02
RNF4P78317 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
RNF4P78317 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
RNF4P78317 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
RNF4P78317 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
RNF4P78317 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.16■□□□□ 0.02
RNF4P78317 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.16■□□□□ 0.02
RNF4P78317 SPDYE7P-202ENST00000420373 878 ntBASIC15.16■□□□□ 0.02
RNF4P78317 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.16■□□□□ 0.02
RNF4P78317 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 AC069262.1-201ENST00000539058 672 ntBASIC15.16■□□□□ 0.02
RNF4P78317 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.16■□□□□ 0.02
RNF4P78317 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
RNF4P78317 Z92544.3-201ENST00000624747 417 ntBASIC15.16■□□□□ 0.02
RNF4P78317 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 PCDHA14-201ENST00000506751 2298 ntBASIC15.16■□□□□ 0.02
RNF4P78317 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
RNF4P78317 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.16■□□□□ 0.02
RNF4P78317 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
RNF4P78317 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
RNF4P78317 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.16■□□□□ 0.02
RNF4P78317 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RNF4P78317 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RNF4P78317 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.15■□□□□ 0.02
RNF4P78317 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNF4P78317 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNF4P78317 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RNF4P78317 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNF4P78317 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.15■□□□□ 0.02
RNF4P78317 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNF4P78317 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
RNF4P78317 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNF4P78317 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
RNF4P78317 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNF4P78317 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.15■□□□□ 0.02
RNF4P78317 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC15.15■□□□□ 0.02
RNF4P78317 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.15■□□□□ 0.02
RNF4P78317 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.15■□□□□ 0.02
RNF4P78317 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.15■□□□□ 0.02
RNF4P78317 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RNF4P78317 RNA5SP410-201ENST00000516285 106 ntBASIC15.15■□□□□ 0.02
RNF4P78317 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.15■□□□□ 0.02
RNF4P78317 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.15■□□□□ 0.02
RNF4P78317 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.15■□□□□ 0.02
RNF4P78317 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNF4P78317 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.15■□□□□ 0.02
RNF4P78317 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.15■□□□□ 0.02
RNF4P78317 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.15■□□□□ 0.02
RNF4P78317 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.15■□□□□ 0.02
RNF4P78317 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.15■□□□□ 0.02
RNF4P78317 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms