Protein–RNA interactions for Protein: P52655

GTF2A1, Transcription initiation factor IIA subunit 1, humanhuman

Predicted RBP Predictions only

Length 376 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1P52655 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
GTF2A1P52655 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
GTF2A1P52655 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
GTF2A1P52655 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
GTF2A1P52655 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
GTF2A1P52655 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
GTF2A1P52655 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
GTF2A1P52655 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC16.15■□□□□ 0.18
GTF2A1P52655 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC16.15■□□□□ 0.18
GTF2A1P52655 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
GTF2A1P52655 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
GTF2A1P52655 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
GTF2A1P52655 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.15■□□□□ 0.18
GTF2A1P52655 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.15■□□□□ 0.18
GTF2A1P52655 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC16.15■□□□□ 0.18
GTF2A1P52655 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC16.15■□□□□ 0.18
GTF2A1P52655 AL023284.2-201ENST00000405850 579 ntBASIC16.15■□□□□ 0.18
GTF2A1P52655 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 KSR1P1-201ENST00000446298 240 ntBASIC16.15■□□□□ 0.18
GTF2A1P52655 FAM207BP-201ENST00000447172 505 ntBASIC16.15■□□□□ 0.18
GTF2A1P52655 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC16.15■□□□□ 0.18
GTF2A1P52655 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC16.15■□□□□ 0.18
GTF2A1P52655 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC16.15■□□□□ 0.18
GTF2A1P52655 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.15■□□□□ 0.18
GTF2A1P52655 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC16.15■□□□□ 0.18
GTF2A1P52655 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
GTF2A1P52655 AC130371.2-201ENST00000619443 611 ntBASIC16.15■□□□□ 0.18
GTF2A1P52655 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
GTF2A1P52655 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
GTF2A1P52655 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
GTF2A1P52655 AC097637.2-201ENST00000624096 1997 ntBASIC16.15■□□□□ 0.18
GTF2A1P52655 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.15■□□□□ 0.18
GTF2A1P52655 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
GTF2A1P52655 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.18
GTF2A1P52655 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.18
GTF2A1P52655 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.14■□□□□ 0.17
GTF2A1P52655 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC16.14■□□□□ 0.17
GTF2A1P52655 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
GTF2A1P52655 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.14■□□□□ 0.17
GTF2A1P52655 AC093525.9-201ENST00000624961 1746 ntBASIC16.14■□□□□ 0.17
GTF2A1P52655 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
GTF2A1P52655 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
GTF2A1P52655 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
GTF2A1P52655 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
GTF2A1P52655 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.14■□□□□ 0.17
GTF2A1P52655 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
GTF2A1P52655 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
GTF2A1P52655 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
GTF2A1P52655 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.14■□□□□ 0.17
GTF2A1P52655 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC16.14■□□□□ 0.17
GTF2A1P52655 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
GTF2A1P52655 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
GTF2A1P52655 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC16.14■□□□□ 0.17
GTF2A1P52655 AL353708.3-201ENST00000610272 989 ntBASIC16.14■□□□□ 0.17
GTF2A1P52655 CR392000.1-201ENST00000624770 1228 ntBASIC16.14■□□□□ 0.17
GTF2A1P52655 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
GTF2A1P52655 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
GTF2A1P52655 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.14■□□□□ 0.17
GTF2A1P52655 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
GTF2A1P52655 AC034236.2-201ENST00000606662 1610 ntBASIC16.14■□□□□ 0.17
GTF2A1P52655 CICP11-201ENST00000434745 2827 ntBASIC16.14■□□□□ 0.17
GTF2A1P52655 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC16.14■□□□□ 0.17
GTF2A1P52655 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
GTF2A1P52655 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
GTF2A1P52655 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC16.14■□□□□ 0.17
GTF2A1P52655 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
GTF2A1P52655 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.14■□□□□ 0.17
GTF2A1P52655 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.14■□□□□ 0.17
GTF2A1P52655 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
GTF2A1P52655 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
GTF2A1P52655 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
GTF2A1P52655 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
GTF2A1P52655 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
GTF2A1P52655 C2-206ENST00000442278 2434 ntTSL 2 BASIC16.14■□□□□ 0.17
GTF2A1P52655 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
GTF2A1P52655 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
GTF2A1P52655 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
GTF2A1P52655 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
GTF2A1P52655 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
GTF2A1P52655 KRT16P1-201ENST00000399124 1418 ntBASIC16.13■□□□□ 0.17
GTF2A1P52655 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
GTF2A1P52655 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
GTF2A1P52655 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms