Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
HOXA1P49639 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
HOXA1P49639 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXA1P49639 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXA1P49639 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXA1P49639 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXA1P49639 AC010327.5-201ENST00000586923 3061 ntBASIC13.7□□□□□ -0.22
HOXA1P49639 HLA-A-202ENST00000376806 1854 ntBASIC13.7□□□□□ -0.22
HOXA1P49639 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
HOXA1P49639 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
HOXA1P49639 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
HOXA1P49639 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXA1P49639 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXA1P49639 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
HOXA1P49639 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXA1P49639 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXA1P49639 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
HOXA1P49639 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
HOXA1P49639 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXA1P49639 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXA1P49639 CD9-202ENST00000382515 1229 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXA1P49639 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC13.69□□□□□ -0.22
HOXA1P49639 AL845331.1-201ENST00000424978 1190 ntBASIC13.69□□□□□ -0.22
HOXA1P49639 DAP-202ENST00000432074 1048 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXA1P49639 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXA1P49639 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 AC063952.2-201ENST00000498792 1227 ntBASIC13.69□□□□□ -0.22
HOXA1P49639 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXA1P49639 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
HOXA1P49639 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXA1P49639 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXA1P49639 HLA-DQB2-231ENST00000435145 2026 ntBASIC13.69□□□□□ -0.22
HOXA1P49639 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXA1P49639 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 AC005840.4-201ENST00000541242 2494 ntBASIC13.69□□□□□ -0.22
HOXA1P49639 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXA1P49639 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXA1P49639 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC13.69□□□□□ -0.22
HOXA1P49639 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
HOXA1P49639 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXA1P49639 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXA1P49639 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXA1P49639 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
HOXA1P49639 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
HOXA1P49639 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXA1P49639 REXO1L2P-201ENST00000425429 2069 ntBASIC13.68□□□□□ -0.22
HOXA1P49639 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXA1P49639 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC13.68□□□□□ -0.22
HOXA1P49639 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXA1P49639 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
HOXA1P49639 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXA1P49639 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.68□□□□□ -0.22
HOXA1P49639 AL391256.1-201ENST00000443260 1855 ntBASIC13.68□□□□□ -0.22
HOXA1P49639 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
HOXA1P49639 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
HOXA1P49639 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
HOXA1P49639 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC13.68□□□□□ -0.22
HOXA1P49639 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms