Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CIITAP33076 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC18.39■□□□□ 0.53
CIITAP33076 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CIITAP33076 AC006449.6-201ENST00000612330 2296 ntBASIC18.39■□□□□ 0.53
CIITAP33076 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CIITAP33076 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CIITAP33076 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC18.39■□□□□ 0.53
CIITAP33076 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CIITAP33076 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CIITAP33076 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CIITAP33076 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
CIITAP33076 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
CIITAP33076 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CIITAP33076 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CIITAP33076 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.38■□□□□ 0.53
CIITAP33076 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.38■□□□□ 0.53
CIITAP33076 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CIITAP33076 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CIITAP33076 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CIITAP33076 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CIITAP33076 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC18.38■□□□□ 0.53
CIITAP33076 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
CIITAP33076 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CIITAP33076 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.38■□□□□ 0.53
CIITAP33076 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CIITAP33076 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CIITAP33076 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CIITAP33076 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.38■□□□□ 0.53
CIITAP33076 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.38■□□□□ 0.53
CIITAP33076 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC18.38■□□□□ 0.53
CIITAP33076 AL390955.2-201ENST00000603032 514 ntBASIC18.38■□□□□ 0.53
CIITAP33076 AL158211.3-201ENST00000607385 239 ntBASIC18.38■□□□□ 0.53
CIITAP33076 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CIITAP33076 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CIITAP33076 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CIITAP33076 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CIITAP33076 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CIITAP33076 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CIITAP33076 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CIITAP33076 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CIITAP33076 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CIITAP33076 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CIITAP33076 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.37■□□□□ 0.53
CIITAP33076 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CIITAP33076 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.37■□□□□ 0.53
CIITAP33076 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.37■□□□□ 0.53
CIITAP33076 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.37■□□□□ 0.53
CIITAP33076 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.37■□□□□ 0.53
CIITAP33076 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CIITAP33076 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 RBM39-205ENST00000397370 612 ntTSL 2 BASIC18.37■□□□□ 0.53
CIITAP33076 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC18.37■□□□□ 0.53
CIITAP33076 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.37■□□□□ 0.53
CIITAP33076 SATB1-217ENST00000493952 626 ntTSL 3 BASIC18.37■□□□□ 0.53
CIITAP33076 PAM16-215ENST00000577031 548 ntTSL 4 BASIC18.37■□□□□ 0.53
CIITAP33076 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC18.37■□□□□ 0.53
CIITAP33076 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.37■□□□□ 0.53
CIITAP33076 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.37■□□□□ 0.53
CIITAP33076 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC18.37■□□□□ 0.53
CIITAP33076 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CIITAP33076 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CIITAP33076 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
CIITAP33076 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.36■□□□□ 0.53
CIITAP33076 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CIITAP33076 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.36■□□□□ 0.53
CIITAP33076 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CIITAP33076 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CIITAP33076 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CIITAP33076 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CIITAP33076 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC18.36■□□□□ 0.53
CIITAP33076 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CIITAP33076 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CIITAP33076 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC18.36■□□□□ 0.53
CIITAP33076 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CIITAP33076 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CIITAP33076 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CIITAP33076 AC092580.3-201ENST00000430932 139 ntBASIC18.36■□□□□ 0.53
CIITAP33076 AC055876.3-201ENST00000431496 288 ntBASIC18.36■□□□□ 0.53
CIITAP33076 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
CIITAP33076 HLA-V-204ENST00000476601 1289 ntBASIC18.36■□□□□ 0.53
CIITAP33076 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CIITAP33076 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CIITAP33076 AC069120.2-201ENST00000524091 540 ntBASIC18.36■□□□□ 0.53
CIITAP33076 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms