Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN4P29074 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN4P29074 AC013268.4-201ENST00000637413 2228 ntBASIC16.54■□□□□ 0.24
PTPN4P29074 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.54■□□□□ 0.24
PTPN4P29074 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.54■□□□□ 0.24
PTPN4P29074 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN4P29074 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.54■□□□□ 0.24
PTPN4P29074 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.54■□□□□ 0.24
PTPN4P29074 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
PTPN4P29074 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN4P29074 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PTPN4P29074 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.53■□□□□ 0.24
PTPN4P29074 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.53■□□□□ 0.24
PTPN4P29074 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.53■□□□□ 0.24
PTPN4P29074 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.53■□□□□ 0.24
PTPN4P29074 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.53■□□□□ 0.24
PTPN4P29074 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
PTPN4P29074 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.53■□□□□ 0.24
PTPN4P29074 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.53■□□□□ 0.24
PTPN4P29074 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.53■□□□□ 0.24
PTPN4P29074 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.53■□□□□ 0.24
PTPN4P29074 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.53■□□□□ 0.24
PTPN4P29074 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.53■□□□□ 0.24
PTPN4P29074 AL589182.2-201ENST00000619332 1049 ntBASIC16.53■□□□□ 0.24
PTPN4P29074 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.53■□□□□ 0.24
PTPN4P29074 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.53■□□□□ 0.24
PTPN4P29074 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
PTPN4P29074 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
PTPN4P29074 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.53■□□□□ 0.24
PTPN4P29074 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.53■□□□□ 0.24
PTPN4P29074 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PTPN4P29074 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.52■□□□□ 0.24
PTPN4P29074 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
PTPN4P29074 FAM45BP-202ENST00000592932 1624 ntBASIC16.52■□□□□ 0.24
PTPN4P29074 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTPN4P29074 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTPN4P29074 TUBB8P12-201ENST00000308911 1335 ntBASIC16.52■□□□□ 0.24
PTPN4P29074 TUBB7P-202ENST00000428444 1305 ntBASIC16.52■□□□□ 0.24
PTPN4P29074 TUBB8P7-204ENST00000567960 1332 ntBASIC16.52■□□□□ 0.24
PTPN4P29074 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTPN4P29074 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTPN4P29074 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.52■□□□□ 0.24
PTPN4P29074 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.52■□□□□ 0.24
PTPN4P29074 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTPN4P29074 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.52■□□□□ 0.24
PTPN4P29074 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
PTPN4P29074 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
PTPN4P29074 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTPN4P29074 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.52■□□□□ 0.24
PTPN4P29074 UPF3AP3-201ENST00000420996 769 ntBASIC16.52■□□□□ 0.24
PTPN4P29074 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.52■□□□□ 0.24
PTPN4P29074 CRCP-205ENST00000431089 942 ntTSL 2 BASIC16.52■□□□□ 0.24
PTPN4P29074 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.52■□□□□ 0.24
PTPN4P29074 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
PTPN4P29074 AC136632.2-201ENST00000512891 861 ntBASIC16.52■□□□□ 0.24
PTPN4P29074 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.52■□□□□ 0.24
PTPN4P29074 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PTPN4P29074 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.52■□□□□ 0.24
PTPN4P29074 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.52■□□□□ 0.24
PTPN4P29074 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTPN4P29074 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
PTPN4P29074 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PTPN4P29074 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.52■□□□□ 0.24
PTPN4P29074 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PTPN4P29074 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PTPN4P29074 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PTPN4P29074 AL353593.2-201ENST00000602529 1483 ntBASIC16.52■□□□□ 0.23
PTPN4P29074 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.52■□□□□ 0.23
PTPN4P29074 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
PTPN4P29074 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
PTPN4P29074 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PTPN4P29074 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PTPN4P29074 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PTPN4P29074 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PTPN4P29074 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms