Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGA1P17096 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGA1P17096 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
HMGA1P17096 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGA1P17096 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGA1P17096 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGA1P17096 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.86■□□□□ 0.29
HMGA1P17096 NME2P1-201ENST00000426182 414 ntBASIC16.86■□□□□ 0.29
HMGA1P17096 DFFBP1-201ENST00000433250 979 ntBASIC16.86■□□□□ 0.29
HMGA1P17096 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.86■□□□□ 0.29
HMGA1P17096 AC245100.5-201ENST00000452108 331 ntBASIC16.86■□□□□ 0.29
HMGA1P17096 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
HMGA1P17096 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.86■□□□□ 0.29
HMGA1P17096 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGA1P17096 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGA1P17096 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGA1P17096 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGA1P17096 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.86■□□□□ 0.29
HMGA1P17096 AC025048.3-201ENST00000590609 569 ntBASIC16.86■□□□□ 0.29
HMGA1P17096 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGA1P17096 AC005702.4-201ENST00000618393 416 ntBASIC16.86■□□□□ 0.29
HMGA1P17096 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
HMGA1P17096 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
HMGA1P17096 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
HMGA1P17096 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGA1P17096 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGA1P17096 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.86■□□□□ 0.29
HMGA1P17096 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
HMGA1P17096 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGA1P17096 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGA1P17096 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGA1P17096 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGA1P17096 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGA1P17096 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGA1P17096 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGA1P17096 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGA1P17096 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGA1P17096 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
HMGA1P17096 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGA1P17096 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGA1P17096 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGA1P17096 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGA1P17096 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HMGA1P17096 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGA1P17096 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
HMGA1P17096 COX5BP8-201ENST00000416911 349 ntBASIC16.85■□□□□ 0.29
HMGA1P17096 AL589987.1-201ENST00000453380 819 ntBASIC16.85■□□□□ 0.29
HMGA1P17096 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.85■□□□□ 0.29
HMGA1P17096 CR383656.12-201ENST00000549567 513 ntBASIC16.85■□□□□ 0.29
HMGA1P17096 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.85■□□□□ 0.29
HMGA1P17096 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
HMGA1P17096 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGA1P17096 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGA1P17096 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGA1P17096 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HMGA1P17096 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGA1P17096 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGA1P17096 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGA1P17096 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.85■□□□□ 0.29
HMGA1P17096 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HMGA1P17096 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
HMGA1P17096 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HMGA1P17096 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGA1P17096 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGA1P17096 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.85■□□□□ 0.29
HMGA1P17096 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
HMGA1P17096 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
HMGA1P17096 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HMGA1P17096 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
HMGA1P17096 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGA1P17096 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 AC004987.2-201ENST00000395959 1148 ntBASIC16.84■□□□□ 0.29
HMGA1P17096 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
HMGA1P17096 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGA1P17096 AC140912.1-201ENST00000577171 1054 ntBASIC16.84■□□□□ 0.29
HMGA1P17096 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 CHCHD2P3-201ENST00000603038 451 ntBASIC16.84■□□□□ 0.29
HMGA1P17096 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGA1P17096 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.84■□□□□ 0.29
HMGA1P17096 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.84■□□□□ 0.29
HMGA1P17096 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
HMGA1P17096 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGA1P17096 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGA1P17096 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HMGA1P17096 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms