Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
TM9SF3Q9HD45 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TM9SF3Q9HD45 AC022144.1-201ENST00000602255 1580 ntBASIC16.41■□□□□ 0.22
TM9SF3Q9HD45 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
TM9SF3Q9HD45 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TM9SF3Q9HD45 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
TM9SF3Q9HD45 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
TM9SF3Q9HD45 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
TM9SF3Q9HD45 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
TM9SF3Q9HD45 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 HLA-H-201ENST00000383620 1096 ntBASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 AC027307.3-201ENST00000594262 1100 ntBASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TM9SF3Q9HD45 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
TM9SF3Q9HD45 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.22
TM9SF3Q9HD45 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 PIN1P1-201ENST00000412108 996 ntBASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 HLA-V-204ENST00000476601 1289 ntBASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TM9SF3Q9HD45 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TM9SF3Q9HD45 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TM9SF3Q9HD45 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TM9SF3Q9HD45 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TM9SF3Q9HD45 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms