Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
IFT140Q96RY7 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
IFT140Q96RY7 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC26.56■■□□□ 1.84
IFT140Q96RY7 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
IFT140Q96RY7 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 MIR1202-201ENST00000408529 83 ntBASIC26.55■■□□□ 1.84
IFT140Q96RY7 HLA-DQB2-229ENST00000411527 1059 ntBASIC26.55■■□□□ 1.84
IFT140Q96RY7 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC26.55■■□□□ 1.84
IFT140Q96RY7 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC26.55■■□□□ 1.84
IFT140Q96RY7 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC26.55■■□□□ 1.84
IFT140Q96RY7 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC26.55■■□□□ 1.84
IFT140Q96RY7 AC006453.4-201ENST00000636949 1252 ntBASIC26.55■■□□□ 1.84
IFT140Q96RY7 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC26.55■■□□□ 1.84
IFT140Q96RY7 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
IFT140Q96RY7 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC26.55■■□□□ 1.84
IFT140Q96RY7 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC26.55■■□□□ 1.84
IFT140Q96RY7 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC26.55■■□□□ 1.84
IFT140Q96RY7 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 MAGEA5-201ENST00000446757 942 ntBASIC26.55■■□□□ 1.84
IFT140Q96RY7 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 AC245884.6-201ENST00000515672 1067 ntBASIC26.55■■□□□ 1.84
IFT140Q96RY7 AC093813.1-201ENST00000605066 256 ntBASIC26.55■■□□□ 1.84
IFT140Q96RY7 MIR7845-201ENST00000618396 99 ntBASIC26.55■■□□□ 1.84
IFT140Q96RY7 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC26.55■■□□□ 1.84
IFT140Q96RY7 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
IFT140Q96RY7 DRD5P1-201ENST00000456605 1438 ntBASIC26.54■■□□□ 1.84
IFT140Q96RY7 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC26.54■■□□□ 1.84
IFT140Q96RY7 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
IFT140Q96RY7 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC26.54■■□□□ 1.84
IFT140Q96RY7 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
IFT140Q96RY7 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
IFT140Q96RY7 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
IFT140Q96RY7 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
IFT140Q96RY7 SDCCAG3P2-201ENST00000326105 1023 ntBASIC26.54■■□□□ 1.84
IFT140Q96RY7 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
IFT140Q96RY7 LBH-202ENST00000401506 485 ntTSL 3 BASIC26.54■■□□□ 1.84
IFT140Q96RY7 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC26.54■■□□□ 1.84
IFT140Q96RY7 CNN2P10-201ENST00000443067 918 ntBASIC26.54■■□□□ 1.84
IFT140Q96RY7 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC26.54■■□□□ 1.84
IFT140Q96RY7 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC26.54■■□□□ 1.84
IFT140Q96RY7 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
IFT140Q96RY7 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC26.54■■□□□ 1.84
IFT140Q96RY7 HNRNPUP1-201ENST00000554987 333 ntBASIC26.54■■□□□ 1.84
IFT140Q96RY7 AC015910.1-201ENST00000579400 975 ntBASIC26.54■■□□□ 1.84
IFT140Q96RY7 GPX4-206ENST00000588919 803 ntTSL 2 BASIC26.54■■□□□ 1.84
IFT140Q96RY7 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC26.54■■□□□ 1.84
IFT140Q96RY7 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
IFT140Q96RY7 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
IFT140Q96RY7 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
IFT140Q96RY7 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC26.53■■□□□ 1.84
IFT140Q96RY7 AL645728.1-201ENST00000366221 2101 ntBASIC26.53■■□□□ 1.84
IFT140Q96RY7 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC26.53■■□□□ 1.84
IFT140Q96RY7 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
IFT140Q96RY7 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
IFT140Q96RY7 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
IFT140Q96RY7 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
IFT140Q96RY7 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
IFT140Q96RY7 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC26.53■■□□□ 1.84
IFT140Q96RY7 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
IFT140Q96RY7 AC136604.1-201ENST00000418535 575 ntBASIC26.53■■□□□ 1.84
IFT140Q96RY7 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
IFT140Q96RY7 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC26.53■■□□□ 1.84
IFT140Q96RY7 AC126915.1-201ENST00000522847 1038 ntBASIC26.53■■□□□ 1.84
IFT140Q96RY7 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC26.53■■□□□ 1.84
IFT140Q96RY7 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC26.53■■□□□ 1.84
IFT140Q96RY7 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC26.53■■□□□ 1.84
IFT140Q96RY7 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC26.53■■□□□ 1.84
IFT140Q96RY7 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
IFT140Q96RY7 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC26.53■■□□□ 1.84
IFT140Q96RY7 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
IFT140Q96RY7 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC26.53■■□□□ 1.84
IFT140Q96RY7 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC26.53■■□□□ 1.84
IFT140Q96RY7 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC26.53■■□□□ 1.84
IFT140Q96RY7 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
IFT140Q96RY7 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
IFT140Q96RY7 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
IFT140Q96RY7 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
IFT140Q96RY7 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC26.52■■□□□ 1.84
IFT140Q96RY7 AC005622.1-201ENST00000636801 1703 ntBASIC26.52■■□□□ 1.84
IFT140Q96RY7 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC26.52■■□□□ 1.84
IFT140Q96RY7 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
IFT140Q96RY7 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
IFT140Q96RY7 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms