Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.18■□□□□ 0.5
HPS3Q969F9 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HPS3Q969F9 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HPS3Q969F9 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HPS3Q969F9 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HPS3Q969F9 CROCCP1-201ENST00000426910 5675 ntBASIC18.18■□□□□ 0.5
HPS3Q969F9 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HPS3Q969F9 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.18■□□□□ 0.5
HPS3Q969F9 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HPS3Q969F9 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HPS3Q969F9 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HPS3Q969F9 AL592424.1-201ENST00000563624 1536 ntBASIC18.18■□□□□ 0.5
HPS3Q969F9 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.18■□□□□ 0.5
HPS3Q969F9 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HPS3Q969F9 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HPS3Q969F9 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HPS3Q969F9 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HPS3Q969F9 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC18.17■□□□□ 0.5
HPS3Q969F9 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HPS3Q969F9 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
HPS3Q969F9 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.17■□□□□ 0.5
HPS3Q969F9 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.17■□□□□ 0.5
HPS3Q969F9 WASH6P-202ENST00000359512 1437 ntBASIC18.17■□□□□ 0.5
HPS3Q969F9 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HPS3Q969F9 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HPS3Q969F9 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC18.17■□□□□ 0.5
HPS3Q969F9 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
HPS3Q969F9 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.17■□□□□ 0.5
HPS3Q969F9 ALG1L5P-201ENST00000482043 771 ntBASIC18.17■□□□□ 0.5
HPS3Q969F9 KRT18P34-201ENST00000488218 1270 ntBASIC18.17■□□□□ 0.5
HPS3Q969F9 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.17■□□□□ 0.5
HPS3Q969F9 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.17■□□□□ 0.5
HPS3Q969F9 AC040169.1-201ENST00000565382 521 ntBASIC18.17■□□□□ 0.5
HPS3Q969F9 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.17■□□□□ 0.5
HPS3Q969F9 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HPS3Q969F9 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC18.17■□□□□ 0.5
HPS3Q969F9 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HPS3Q969F9 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HPS3Q969F9 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.17■□□□□ 0.5
HPS3Q969F9 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.17■□□□□ 0.5
HPS3Q969F9 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HPS3Q969F9 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.16■□□□□ 0.5
HPS3Q969F9 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.16■□□□□ 0.5
HPS3Q969F9 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS3Q969F9 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
HPS3Q969F9 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS3Q969F9 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS3Q969F9 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS3Q969F9 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
HPS3Q969F9 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HPS3Q969F9 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HPS3Q969F9 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC18.16■□□□□ 0.5
HPS3Q969F9 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HPS3Q969F9 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS3Q969F9 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS3Q969F9 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HPS3Q969F9 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS3Q969F9 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HPS3Q969F9 AC002056.1-201ENST00000395613 760 ntBASIC18.16■□□□□ 0.5
HPS3Q969F9 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.16■□□□□ 0.5
HPS3Q969F9 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC18.16■□□□□ 0.5
HPS3Q969F9 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
HPS3Q969F9 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.16■□□□□ 0.5
HPS3Q969F9 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.16■□□□□ 0.5
HPS3Q969F9 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.16■□□□□ 0.5
HPS3Q969F9 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.16■□□□□ 0.5
HPS3Q969F9 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.16■□□□□ 0.5
HPS3Q969F9 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.16■□□□□ 0.5
HPS3Q969F9 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HPS3Q969F9 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC18.16■□□□□ 0.5
HPS3Q969F9 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS3Q969F9 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
HPS3Q969F9 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.16■□□□□ 0.5
HPS3Q969F9 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HPS3Q969F9 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC18.16■□□□□ 0.5
HPS3Q969F9 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HPS3Q969F9 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC18.16■□□□□ 0.5
HPS3Q969F9 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HPS3Q969F9 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
HPS3Q969F9 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HPS3Q969F9 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC18.16■□□□□ 0.5
HPS3Q969F9 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.16■□□□□ 0.5
HPS3Q969F9 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC18.16■□□□□ 0.5
HPS3Q969F9 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.15■□□□□ 0.5
HPS3Q969F9 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC18.15■□□□□ 0.5
HPS3Q969F9 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.15■□□□□ 0.5
HPS3Q969F9 AP003680.1-201ENST00000598970 3660 ntBASIC18.15■□□□□ 0.5
HPS3Q969F9 AL365203.3-201ENST00000609742 2057 ntBASIC18.15■□□□□ 0.5
HPS3Q969F9 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.15■□□□□ 0.5
HPS3Q969F9 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.15■□□□□ 0.5
HPS3Q969F9 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms