Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 GCK-202ENST00000345378 2421 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 RPS2P28-201ENST00000314255 741 ntBASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 MIR1224-201ENST00000408193 85 ntBASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 IGHV3-65-201ENST00000523210 341 ntBASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 TBCB-205ENST00000585746 875 ntTSL 3 BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC54Q8NEL0 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 AL596087.1-201ENST00000400979 1969 ntBASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 AKR1C7P-201ENST00000305623 895 ntBASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 INIP-202ENST00000374236 874 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 AC073621.1-201ENST00000392730 636 ntBASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC54Q8NEL0 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 SLC9A3P2-201ENST00000447821 2021 ntBASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC54Q8NEL0 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms