Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 FAM86C2P-203ENST00000528684 1004 ntBASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 RARRES2P8-201ENST00000566335 367 ntBASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 MIR3687-2-201ENST00000577708 61 ntBASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 MIR3687-1-201ENST00000614492 61 ntBASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
SYNE3Q6ZMZ3 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC19.33■□□□□ 0.69
SYNE3Q6ZMZ3 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SYNE3Q6ZMZ3 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SYNE3Q6ZMZ3 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
SYNE3Q6ZMZ3 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC19.33■□□□□ 0.69
SYNE3Q6ZMZ3 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC19.33■□□□□ 0.69
SYNE3Q6ZMZ3 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SYNE3Q6ZMZ3 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SYNE3Q6ZMZ3 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SYNE3Q6ZMZ3 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 COX10-202ENST00000429152 875 ntTSL 2 BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 MKNK2P1-201ENST00000437526 628 ntBASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 ACTG1P14-201ENST00000446382 1122 ntBASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SYNE3Q6ZMZ3 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 PKD1P5-201ENST00000532415 10291 ntBASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 AC092364.2-201ENST00000596710 2692 ntBASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 AC099522.2-201ENST00000607001 744 ntBASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 AC092902.6-201ENST00000641783 218 ntBASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SYNE3Q6ZMZ3 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SYNE3Q6ZMZ3 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms