Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PKNOX1P55347 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.17■□□□□ 0.18
PKNOX1P55347 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PKNOX1P55347 AC136632.2-201ENST00000512891 861 ntBASIC16.17■□□□□ 0.18
PKNOX1P55347 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.17■□□□□ 0.18
PKNOX1P55347 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PKNOX1P55347 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.17■□□□□ 0.18
PKNOX1P55347 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
PKNOX1P55347 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.17■□□□□ 0.18
PKNOX1P55347 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
PKNOX1P55347 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC16.17■□□□□ 0.18
PKNOX1P55347 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.17■□□□□ 0.18
PKNOX1P55347 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.17■□□□□ 0.18
PKNOX1P55347 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
PKNOX1P55347 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PKNOX1P55347 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.17■□□□□ 0.18
PKNOX1P55347 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
PKNOX1P55347 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
PKNOX1P55347 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.16■□□□□ 0.18
PKNOX1P55347 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.16■□□□□ 0.18
PKNOX1P55347 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.16■□□□□ 0.18
PKNOX1P55347 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.16■□□□□ 0.18
PKNOX1P55347 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 AC006449.6-201ENST00000612330 2296 ntBASIC16.16■□□□□ 0.18
PKNOX1P55347 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
PKNOX1P55347 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.16■□□□□ 0.18
PKNOX1P55347 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.16■□□□□ 0.18
PKNOX1P55347 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.16■□□□□ 0.18
PKNOX1P55347 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.16■□□□□ 0.18
PKNOX1P55347 AC073621.1-201ENST00000392730 636 ntBASIC16.16■□□□□ 0.18
PKNOX1P55347 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
PKNOX1P55347 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.16■□□□□ 0.18
PKNOX1P55347 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.16■□□□□ 0.18
PKNOX1P55347 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.16■□□□□ 0.18
PKNOX1P55347 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.16■□□□□ 0.18
PKNOX1P55347 OR7E14P-202ENST00000530490 1290 ntBASIC16.16■□□□□ 0.18
PKNOX1P55347 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.16■□□□□ 0.18
PKNOX1P55347 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.16■□□□□ 0.18
PKNOX1P55347 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.16■□□□□ 0.18
PKNOX1P55347 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.16■□□□□ 0.18
PKNOX1P55347 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.16■□□□□ 0.18
PKNOX1P55347 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.16■□□□□ 0.18
PKNOX1P55347 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.16■□□□□ 0.18
PKNOX1P55347 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.16■□□□□ 0.18
PKNOX1P55347 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 NORAD-201ENST00000565493 5339 ntBASIC16.16■□□□□ 0.18
PKNOX1P55347 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
PKNOX1P55347 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PKNOX1P55347 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.15■□□□□ 0.18
PKNOX1P55347 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.15■□□□□ 0.18
PKNOX1P55347 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.15■□□□□ 0.18
PKNOX1P55347 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
PKNOX1P55347 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
PKNOX1P55347 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.15■□□□□ 0.18
PKNOX1P55347 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.15■□□□□ 0.18
PKNOX1P55347 AC073648.2-201ENST00000510116 352 ntBASIC16.15■□□□□ 0.18
PKNOX1P55347 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
PKNOX1P55347 AC008667.4-201ENST00000607370 168 ntBASIC16.15■□□□□ 0.18
PKNOX1P55347 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.15■□□□□ 0.18
PKNOX1P55347 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
PKNOX1P55347 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PKNOX1P55347 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.15■□□□□ 0.18
PKNOX1P55347 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms