Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.8■□□□□ 0.6
HMGCS2P54868 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGCS2P54868 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HMGCS2P54868 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
HMGCS2P54868 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.8■□□□□ 0.6
HMGCS2P54868 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGCS2P54868 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HMGCS2P54868 CYP4F24P-201ENST00000586049 1580 ntBASIC18.8■□□□□ 0.6
HMGCS2P54868 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.8■□□□□ 0.6
HMGCS2P54868 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGCS2P54868 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HMGCS2P54868 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC18.79■□□□□ 0.6
HMGCS2P54868 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
HMGCS2P54868 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGCS2P54868 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGCS2P54868 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGCS2P54868 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.79■□□□□ 0.6
HMGCS2P54868 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
HMGCS2P54868 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
HMGCS2P54868 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC18.79■□□□□ 0.6
HMGCS2P54868 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
HMGCS2P54868 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGCS2P54868 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
HMGCS2P54868 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGCS2P54868 FUZ-207ENST00000526575 482 ntTSL 4 BASIC18.79■□□□□ 0.6
HMGCS2P54868 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC18.79■□□□□ 0.6
HMGCS2P54868 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC18.79■□□□□ 0.6
HMGCS2P54868 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGCS2P54868 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
HMGCS2P54868 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.79■□□□□ 0.6
HMGCS2P54868 APOC4-201ENST00000591600 348 ntTSL 3 BASIC18.79■□□□□ 0.6
HMGCS2P54868 WFDC1-204ENST00000613603 549 ntBASIC18.79■□□□□ 0.6
HMGCS2P54868 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGCS2P54868 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HMGCS2P54868 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGCS2P54868 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGCS2P54868 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGCS2P54868 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGCS2P54868 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGCS2P54868 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGCS2P54868 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC18.79■□□□□ 0.6
HMGCS2P54868 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGCS2P54868 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGCS2P54868 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGCS2P54868 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGCS2P54868 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.78■□□□□ 0.6
HMGCS2P54868 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.78■□□□□ 0.6
HMGCS2P54868 AC005915.1-201ENST00000624912 2018 ntBASIC18.78■□□□□ 0.6
HMGCS2P54868 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.78■□□□□ 0.6
HMGCS2P54868 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC18.78■□□□□ 0.6
HMGCS2P54868 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
HMGCS2P54868 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC18.78■□□□□ 0.6
HMGCS2P54868 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 AC022210.1-201ENST00000449856 793 ntBASIC18.78■□□□□ 0.6
HMGCS2P54868 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC18.78■□□□□ 0.6
HMGCS2P54868 NEU3-203ENST00000529024 581 ntTSL 3 BASIC18.78■□□□□ 0.6
HMGCS2P54868 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC18.78■□□□□ 0.6
HMGCS2P54868 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.78■□□□□ 0.6
HMGCS2P54868 MIR4321-201ENST00000592276 80 ntBASIC18.78■□□□□ 0.6
HMGCS2P54868 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
HMGCS2P54868 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.78■□□□□ 0.6
HMGCS2P54868 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGCS2P54868 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
HMGCS2P54868 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
HMGCS2P54868 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.77■□□□□ 0.6
HMGCS2P54868 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGCS2P54868 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGCS2P54868 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HMGCS2P54868 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGCS2P54868 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGCS2P54868 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGCS2P54868 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
HMGCS2P54868 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
HMGCS2P54868 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGCS2P54868 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGCS2P54868 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.77■□□□□ 0.6
HMGCS2P54868 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HMGCS2P54868 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HMGCS2P54868 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
HMGCS2P54868 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC18.77■□□□□ 0.6
HMGCS2P54868 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC18.77■□□□□ 0.6
HMGCS2P54868 TIMM17BP1-201ENST00000545713 516 ntBASIC18.77■□□□□ 0.6
HMGCS2P54868 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms