Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
LIG3P49916 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
LIG3P49916 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIG3P49916 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIG3P49916 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.37■□□□□ 0.37
LIG3P49916 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
LIG3P49916 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIG3P49916 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC17.37■□□□□ 0.37
LIG3P49916 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIG3P49916 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.37■□□□□ 0.37
LIG3P49916 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC17.36■□□□□ 0.37
LIG3P49916 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.36■□□□□ 0.37
LIG3P49916 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.36■□□□□ 0.37
LIG3P49916 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 AC104581.4-201ENST00000623126 3052 ntBASIC17.36■□□□□ 0.37
LIG3P49916 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
LIG3P49916 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC17.36■□□□□ 0.37
LIG3P49916 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.36■□□□□ 0.37
LIG3P49916 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.36■□□□□ 0.37
LIG3P49916 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.36■□□□□ 0.37
LIG3P49916 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.36■□□□□ 0.37
LIG3P49916 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 RPL18-209ENST00000550645 463 ntTSL 5 BASIC17.36■□□□□ 0.37
LIG3P49916 RPL18-214ENST00000552588 559 ntTSL 3 BASIC17.36■□□□□ 0.37
LIG3P49916 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.36■□□□□ 0.37
LIG3P49916 MIR1199-201ENST00000621445 119 ntBASIC17.36■□□□□ 0.37
LIG3P49916 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC17.36■□□□□ 0.37
LIG3P49916 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.36■□□□□ 0.37
LIG3P49916 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.36■□□□□ 0.37
LIG3P49916 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 SNX18-202ENST00000343017 3140 ntBASIC17.36■□□□□ 0.37
LIG3P49916 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.36■□□□□ 0.37
LIG3P49916 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
LIG3P49916 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LIG3P49916 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.35■□□□□ 0.37
LIG3P49916 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
LIG3P49916 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC17.35■□□□□ 0.37
LIG3P49916 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
LIG3P49916 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC17.35■□□□□ 0.37
LIG3P49916 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.35■□□□□ 0.37
LIG3P49916 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC17.35■□□□□ 0.37
LIG3P49916 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 LINC00982-205ENST00000420957 435 ntBASIC17.35■□□□□ 0.37
LIG3P49916 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.35■□□□□ 0.37
LIG3P49916 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.35■□□□□ 0.37
LIG3P49916 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.35■□□□□ 0.37
LIG3P49916 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.35■□□□□ 0.37
LIG3P49916 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.35■□□□□ 0.37
LIG3P49916 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
LIG3P49916 AC117500.6-201ENST00000624871 588 ntBASIC17.35■□□□□ 0.37
LIG3P49916 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.35■□□□□ 0.37
LIG3P49916 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 CICP4-201ENST00000447359 2812 ntBASIC17.35■□□□□ 0.37
LIG3P49916 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.35■□□□□ 0.37
LIG3P49916 AC006504.4-201ENST00000592118 1568 ntBASIC17.35■□□□□ 0.37
LIG3P49916 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
LIG3P49916 AL135999.2-201ENST00000622438 1686 ntBASIC17.35■□□□□ 0.37
LIG3P49916 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
LIG3P49916 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.35■□□□□ 0.37
LIG3P49916 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LIG3P49916 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.34■□□□□ 0.37
LIG3P49916 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC17.34■□□□□ 0.37
LIG3P49916 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIG3P49916 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
LIG3P49916 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms