Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC15.73■□□□□ 0.11
MSX2P35548 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.73■□□□□ 0.11
MSX2P35548 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC15.73■□□□□ 0.11
MSX2P35548 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
MSX2P35548 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 FUOM-202ENST00000368551 628 ntTSL 3 BASIC15.73■□□□□ 0.11
MSX2P35548 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC15.73■□□□□ 0.11
MSX2P35548 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 AC005521.1-201ENST00000393351 872 ntBASIC15.73■□□□□ 0.11
MSX2P35548 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC15.73■□□□□ 0.11
MSX2P35548 AC246785.2-201ENST00000432512 513 ntBASIC15.73■□□□□ 0.11
MSX2P35548 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC15.73■□□□□ 0.11
MSX2P35548 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC15.73■□□□□ 0.11
MSX2P35548 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
MSX2P35548 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC15.73■□□□□ 0.11
MSX2P35548 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.73■□□□□ 0.11
MSX2P35548 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.73■□□□□ 0.11
MSX2P35548 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.73■□□□□ 0.11
MSX2P35548 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
MSX2P35548 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.73■□□□□ 0.11
MSX2P35548 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
MSX2P35548 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
MSX2P35548 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
MSX2P35548 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MSX2P35548 GPAA1P2-202ENST00000606848 1787 ntBASIC15.72■□□□□ 0.11
MSX2P35548 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.72■□□□□ 0.11
MSX2P35548 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSX2P35548 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MSX2P35548 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSX2P35548 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MSX2P35548 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSX2P35548 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSX2P35548 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC15.72■□□□□ 0.11
MSX2P35548 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC15.72■□□□□ 0.11
MSX2P35548 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MSX2P35548 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSX2P35548 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSX2P35548 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MSX2P35548 RCN1P2-201ENST00000398357 915 ntBASIC15.72■□□□□ 0.11
MSX2P35548 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC15.72■□□□□ 0.11
MSX2P35548 S100A2-206ENST00000497140 697 ntTSL 2 BASIC15.72■□□□□ 0.11
MSX2P35548 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC15.72■□□□□ 0.11
MSX2P35548 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC15.72■□□□□ 0.11
MSX2P35548 MIR4492-201ENST00000581627 80 ntBASIC15.72■□□□□ 0.11
MSX2P35548 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC15.72■□□□□ 0.11
MSX2P35548 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC15.72■□□□□ 0.11
MSX2P35548 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC15.72■□□□□ 0.11
MSX2P35548 AP000867.4-201ENST00000641616 219 ntBASIC15.72■□□□□ 0.11
MSX2P35548 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.72■□□□□ 0.11
MSX2P35548 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSX2P35548 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSX2P35548 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSX2P35548 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSX2P35548 TOP3BP1-201ENST00000420768 1380 ntBASIC15.72■□□□□ 0.11
MSX2P35548 CICP24-201ENST00000605464 2705 ntBASIC15.72■□□□□ 0.11
MSX2P35548 AC006486.2-201ENST00000624246 2199 ntBASIC15.72■□□□□ 0.11
MSX2P35548 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MSX2P35548 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.72■□□□□ 0.11
MSX2P35548 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MSX2P35548 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MSX2P35548 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MSX2P35548 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
MSX2P35548 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.71■□□□□ 0.11
MSX2P35548 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.71■□□□□ 0.11
MSX2P35548 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC15.71■□□□□ 0.11
MSX2P35548 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.71■□□□□ 0.11
MSX2P35548 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC15.71■□□□□ 0.11
MSX2P35548 FLJ16779-201ENST00000612722 7638 ntBASIC15.71■□□□□ 0.11
MSX2P35548 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
MSX2P35548 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MSX2P35548 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
MSX2P35548 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
MSX2P35548 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.71■□□□□ 0.11
MSX2P35548 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
MSX2P35548 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MSX2P35548 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
MSX2P35548 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.11
MSX2P35548 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.71■□□□□ 0.11
MSX2P35548 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.71■□□□□ 0.11
MSX2P35548 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC15.71■□□□□ 0.11
MSX2P35548 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
MSX2P35548 AC133561.5-201ENST00000635547 218 ntBASIC15.71■□□□□ 0.11
MSX2P35548 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.71■□□□□ 0.11
MSX2P35548 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms