Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.11■□□□□ 0.17
SHMT2P34897 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
SHMT2P34897 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.11■□□□□ 0.17
SHMT2P34897 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
SHMT2P34897 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SHMT2P34897 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
SHMT2P34897 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.11■□□□□ 0.17
SHMT2P34897 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 AC254562.1-201ENST00000417586 456 ntBASIC16.11■□□□□ 0.17
SHMT2P34897 SPDYE11-202ENST00000450699 704 ntBASIC16.11■□□□□ 0.17
SHMT2P34897 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.11■□□□□ 0.17
SHMT2P34897 AL135744.1-201ENST00000565098 629 ntBASIC16.11■□□□□ 0.17
SHMT2P34897 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.11■□□□□ 0.17
SHMT2P34897 SPDYE9P-201ENST00000570642 692 ntBASIC16.11■□□□□ 0.17
SHMT2P34897 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
SHMT2P34897 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 SPDYE10P-202ENST00000612005 668 ntBASIC16.11■□□□□ 0.17
SHMT2P34897 SPDYE8P-202ENST00000612377 668 ntBASIC16.11■□□□□ 0.17
SHMT2P34897 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.11■□□□□ 0.17
SHMT2P34897 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.11■□□□□ 0.17
SHMT2P34897 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.11■□□□□ 0.17
SHMT2P34897 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
SHMT2P34897 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.11■□□□□ 0.17
SHMT2P34897 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.11■□□□□ 0.17
SHMT2P34897 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
SHMT2P34897 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
SHMT2P34897 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.11■□□□□ 0.17
SHMT2P34897 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 PAUPAR-201ENST00000630360 2965 ntBASIC16.11■□□□□ 0.17
SHMT2P34897 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
SHMT2P34897 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SHMT2P34897 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.11■□□□□ 0.17
SHMT2P34897 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.1■□□□□ 0.17
SHMT2P34897 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 AC105917.1-201ENST00000506637 2539 ntBASIC16.1■□□□□ 0.17
SHMT2P34897 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
SHMT2P34897 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
SHMT2P34897 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SHMT2P34897 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
SHMT2P34897 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.1■□□□□ 0.17
SHMT2P34897 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 TFAMP1-201ENST00000412727 736 ntBASIC16.1■□□□□ 0.17
SHMT2P34897 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 TIMM8BP1-201ENST00000452384 211 ntBASIC16.1■□□□□ 0.17
SHMT2P34897 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.1■□□□□ 0.17
SHMT2P34897 KRT18P34-201ENST00000488218 1270 ntBASIC16.1■□□□□ 0.17
SHMT2P34897 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC16.1■□□□□ 0.17
SHMT2P34897 AP000344.2-201ENST00000512987 629 ntBASIC16.1■□□□□ 0.17
SHMT2P34897 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.1■□□□□ 0.17
SHMT2P34897 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.1■□□□□ 0.17
SHMT2P34897 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
SHMT2P34897 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.1■□□□□ 0.17
SHMT2P34897 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
SHMT2P34897 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.1■□□□□ 0.17
SHMT2P34897 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 AC016027.1-202ENST00000607927 1699 ntBASIC16.1■□□□□ 0.17
SHMT2P34897 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.1■□□□□ 0.17
SHMT2P34897 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.1■□□□□ 0.17
SHMT2P34897 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.1■□□□□ 0.17
SHMT2P34897 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
SHMT2P34897 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.09■□□□□ 0.17
SHMT2P34897 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.09■□□□□ 0.17
SHMT2P34897 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.09■□□□□ 0.17
SHMT2P34897 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
SHMT2P34897 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms