Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
APOBP04114 GUK1-206ENST00000366723 845 ntTSL 5 BASIC10.02□□□□□ -0.81
APOBP04114 C1QBPP1-201ENST00000400117 770 ntBASIC10.02□□□□□ -0.81
APOBP04114 IMP3P2-201ENST00000489760 475 ntBASIC10.02□□□□□ -0.81
APOBP04114 SCARNA20.5-201ENST00000516991 142 ntBASIC10.02□□□□□ -0.81
APOBP04114 AP006547.1-201ENST00000563435 692 ntBASIC10.02□□□□□ -0.81
APOBP04114 AL022328.3-201ENST00000607943 679 ntBASIC10.02□□□□□ -0.81
APOBP04114 AP003419.4-201ENST00000616071 517 ntBASIC10.02□□□□□ -0.81
APOBP04114 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC10.02□□□□□ -0.81
APOBP04114 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.81
APOBP04114 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC10.02□□□□□ -0.81
APOBP04114 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC10.02□□□□□ -0.81
APOBP04114 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
APOBP04114 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC10.02□□□□□ -0.81
APOBP04114 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
APOBP04114 AC016694.1-201ENST00000434179 700 ntBASIC10.02□□□□□ -0.81
APOBP04114 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC10.02□□□□□ -0.81
APOBP04114 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC10.02□□□□□ -0.81
APOBP04114 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC10.02□□□□□ -0.81
APOBP04114 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.81
APOBP04114 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC10.02□□□□□ -0.81
APOBP04114 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC10.02□□□□□ -0.81
APOBP04114 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC10.01□□□□□ -0.81
APOBP04114 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC10.01□□□□□ -0.81
APOBP04114 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC10.01□□□□□ -0.81
APOBP04114 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC10.01□□□□□ -0.81
APOBP04114 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC10.01□□□□□ -0.81
APOBP04114 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC10.01□□□□□ -0.81
APOBP04114 U62317.3-201ENST00000608319 855 ntBASIC10.01□□□□□ -0.81
APOBP04114 LINC02012-201ENST00000608206 1725 ntBASIC10.01□□□□□ -0.81
APOBP04114 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 EML3-217ENST00000531557 2509 ntTSL 5 BASIC10.01□□□□□ -0.81
APOBP04114 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC10.01□□□□□ -0.81
APOBP04114 CSH2-202ENST00000345366 598 ntTSL 5 BASIC10.01□□□□□ -0.81
APOBP04114 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC10.01□□□□□ -0.81
APOBP04114 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC10.01□□□□□ -0.81
APOBP04114 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC10.01□□□□□ -0.81
APOBP04114 RN7SL574P-201ENST00000581512 297 ntBASIC10.01□□□□□ -0.81
APOBP04114 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC10.01□□□□□ -0.81
APOBP04114 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
APOBP04114 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC10.01□□□□□ -0.81
APOBP04114 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
APOBP04114 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC10.01□□□□□ -0.81
APOBP04114 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC10.01□□□□□ -0.81
APOBP04114 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC10.01□□□□□ -0.81
APOBP04114 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC10.01□□□□□ -0.81
APOBP04114 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC10.01□□□□□ -0.81
APOBP04114 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC10.01□□□□□ -0.81
APOBP04114 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC10□□□□□ -0.81
APOBP04114 AC069218.1-201ENST00000435269 762 ntBASIC10□□□□□ -0.81
APOBP04114 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC10□□□□□ -0.81
APOBP04114 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC10□□□□□ -0.81
APOBP04114 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC10□□□□□ -0.81
APOBP04114 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC10□□□□□ -0.81
APOBP04114 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC10□□□□□ -0.81
APOBP04114 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC10□□□□□ -0.81
APOBP04114 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 SNX21-203ENST00000372541 771 ntTSL 2 BASIC10□□□□□ -0.81
APOBP04114 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC10□□□□□ -0.81
APOBP04114 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC10□□□□□ -0.81
APOBP04114 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC10□□□□□ -0.81
APOBP04114 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC10□□□□□ -0.81
APOBP04114 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
APOBP04114 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC10□□□□□ -0.81
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms