Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
PRKNO60260 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PRKNO60260 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.29■□□□□ 0.04
PRKNO60260 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.29■□□□□ 0.04
PRKNO60260 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PRKNO60260 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PRKNO60260 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.28■□□□□ 0.04
PRKNO60260 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC15.28■□□□□ 0.04
PRKNO60260 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
PRKNO60260 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.28■□□□□ 0.04
PRKNO60260 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.28■□□□□ 0.04
PRKNO60260 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
PRKNO60260 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.28■□□□□ 0.04
PRKNO60260 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
PRKNO60260 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.28■□□□□ 0.04
PRKNO60260 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC15.28■□□□□ 0.04
PRKNO60260 AC142381.1-201ENST00000426099 345 ntBASIC15.28■□□□□ 0.04
PRKNO60260 RBPMS2P1-201ENST00000437762 623 ntBASIC15.28■□□□□ 0.04
PRKNO60260 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
PRKNO60260 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC15.28■□□□□ 0.04
PRKNO60260 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.28■□□□□ 0.04
PRKNO60260 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.28■□□□□ 0.04
PRKNO60260 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.28■□□□□ 0.04
PRKNO60260 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
PRKNO60260 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC15.28■□□□□ 0.04
PRKNO60260 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC15.28■□□□□ 0.04
PRKNO60260 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
PRKNO60260 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.28■□□□□ 0.04
PRKNO60260 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PRKNO60260 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.28■□□□□ 0.04
PRKNO60260 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.28■□□□□ 0.04
PRKNO60260 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
PRKNO60260 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.04
PRKNO60260 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.04
PRKNO60260 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.27■□□□□ 0.04
PRKNO60260 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
PRKNO60260 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
PRKNO60260 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
PRKNO60260 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PRKNO60260 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PRKNO60260 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
PRKNO60260 AC008741.2-201ENST00000612792 3115 ntBASIC15.27■□□□□ 0.04
PRKNO60260 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.27■□□□□ 0.04
PRKNO60260 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PRKNO60260 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
PRKNO60260 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
PRKNO60260 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PRKNO60260 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
PRKNO60260 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
PRKNO60260 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PRKNO60260 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PRKNO60260 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
PRKNO60260 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.27■□□□□ 0.04
PRKNO60260 PON3-203ENST00000427422 894 ntTSL 3 BASIC15.27■□□□□ 0.04
PRKNO60260 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.27■□□□□ 0.04
PRKNO60260 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.27■□□□□ 0.04
PRKNO60260 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.27■□□□□ 0.04
PRKNO60260 PRYP6-201ENST00000514804 343 ntBASIC15.27■□□□□ 0.04
PRKNO60260 AC004449.1-201ENST00000564240 433 ntBASIC15.27■□□□□ 0.04
PRKNO60260 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.27■□□□□ 0.04
PRKNO60260 AC073389.1-201ENST00000595595 795 ntBASIC15.27■□□□□ 0.04
PRKNO60260 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.27■□□□□ 0.04
PRKNO60260 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.27■□□□□ 0.04
PRKNO60260 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
PRKNO60260 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.27■□□□□ 0.03
PRKNO60260 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PRKNO60260 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PRKNO60260 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.27■□□□□ 0.03
PRKNO60260 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC15.27■□□□□ 0.03
PRKNO60260 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PRKNO60260 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PRKNO60260 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
PRKNO60260 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PRKNO60260 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PRKNO60260 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PRKNO60260 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PRKNO60260 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.03
PRKNO60260 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms