Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SDCBPO00560 SART3-203ENST00000546611 1184 ntBASIC14.04□□□□□ -0.16
SDCBPO00560 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SDCBPO00560 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
SDCBPO00560 RNF151-202ENST00000569210 853 ntTSL 2 BASIC14.04□□□□□ -0.16
SDCBPO00560 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC14.04□□□□□ -0.16
SDCBPO00560 CLEC4GP1-201ENST00000596555 870 ntBASIC14.04□□□□□ -0.16
SDCBPO00560 AL139424.1-201ENST00000607572 797 ntBASIC14.04□□□□□ -0.16
SDCBPO00560 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
SDCBPO00560 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC14.04□□□□□ -0.16
SDCBPO00560 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDCBPO00560 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDCBPO00560 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.04□□□□□ -0.16
SDCBPO00560 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
SDCBPO00560 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDCBPO00560 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDCBPO00560 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.04□□□□□ -0.16
SDCBPO00560 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDCBPO00560 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDCBPO00560 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.04□□□□□ -0.16
SDCBPO00560 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDCBPO00560 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SDCBPO00560 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
SDCBPO00560 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
SDCBPO00560 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.03□□□□□ -0.16
SDCBPO00560 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.03□□□□□ -0.16
SDCBPO00560 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
SDCBPO00560 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.03□□□□□ -0.16
SDCBPO00560 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
SDCBPO00560 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC14.03□□□□□ -0.16
SDCBPO00560 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC14.03□□□□□ -0.16
SDCBPO00560 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 HIST2H3DP1-201ENST00000401004 416 ntBASIC14.03□□□□□ -0.16
SDCBPO00560 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC14.03□□□□□ -0.16
SDCBPO00560 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC14.03□□□□□ -0.16
SDCBPO00560 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC14.03□□□□□ -0.16
SDCBPO00560 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC14.03□□□□□ -0.16
SDCBPO00560 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC14.03□□□□□ -0.16
SDCBPO00560 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC14.03□□□□□ -0.16
SDCBPO00560 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
SDCBPO00560 SDCCAG3P1-201ENST00000589292 1150 ntBASIC14.03□□□□□ -0.16
SDCBPO00560 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC14.03□□□□□ -0.16
SDCBPO00560 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
SDCBPO00560 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
SDCBPO00560 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC14.03□□□□□ -0.16
SDCBPO00560 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
SDCBPO00560 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.03□□□□□ -0.16
SDCBPO00560 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 AC126177.1-201ENST00000547829 2218 ntBASIC14.03□□□□□ -0.16
SDCBPO00560 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
SDCBPO00560 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
SDCBPO00560 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.02□□□□□ -0.16
SDCBPO00560 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SDCBPO00560 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SDCBPO00560 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SDCBPO00560 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.02□□□□□ -0.16
SDCBPO00560 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SDCBPO00560 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC14.02□□□□□ -0.16
SDCBPO00560 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SDCBPO00560 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC14.02□□□□□ -0.16
SDCBPO00560 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
SDCBPO00560 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
SDCBPO00560 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SDCBPO00560 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SDCBPO00560 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
SDCBPO00560 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC14.02□□□□□ -0.16
SDCBPO00560 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
SDCBPO00560 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC14.02□□□□□ -0.16
SDCBPO00560 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SDCBPO00560 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC14.02□□□□□ -0.16
SDCBPO00560 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
SDCBPO00560 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
SDCBPO00560 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms