Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC234783.1-201ENST00000441761 496 ntBASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 AC007389.4-201ENST00000454674 793 ntBASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 AC092658.1-201ENST00000505836 891 ntBASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 AC123567.1-201ENST00000548294 1261 ntBASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 AL512343.1-201ENST00000605837 169 ntBASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 AC004461.2-201ENST00000629517 803 ntBASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
PCDHGA1Q9Y5H4 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 BOLA2P3-201ENST00000404566 256 ntBASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 ELK1P1-201ENST00000485699 580 ntBASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC15.72■□□□□ 0.11
PCDHGA1Q9Y5H4 TNRC18P3-201ENST00000441896 2691 ntBASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 AC009053.2-201ENST00000563701 2365 ntBASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
PCDHGA1Q9Y5H4 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms