Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 ALOX12P2-203ENST00000570921 1945 ntBASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CHMP1AQ9HD42 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 SOD2-201ENST00000337404 991 ntTSL 2 BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 NUS1P2-201ENST00000417358 873 ntBASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 NME3-204ENST00000563498 920 ntTSL 2 BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CHMP1AQ9HD42 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 AC099336.1-202ENST00000602961 463 ntBASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 AC116407.4-201ENST00000623319 1061 ntBASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 AP000867.4-201ENST00000641616 219 ntBASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 AMT-206ENST00000458307 1860 ntTSL 2 BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CHMP1AQ9HD42 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms