Protein–RNA interactions for Protein: Q99453

PHOX2B, Paired mesoderm homeobox protein 2B, humanhuman

Predictions only

Length 314 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHOX2BQ99453 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
PHOX2BQ99453 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.63■□□□□ 0.25
PHOX2BQ99453 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
PHOX2BQ99453 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.63■□□□□ 0.25
PHOX2BQ99453 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
PHOX2BQ99453 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.63■□□□□ 0.25
PHOX2BQ99453 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC16.63■□□□□ 0.25
PHOX2BQ99453 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.63■□□□□ 0.25
PHOX2BQ99453 AC253536.4-201ENST00000440539 267 ntBASIC16.63■□□□□ 0.25
PHOX2BQ99453 KLF2P4-201ENST00000451959 1225 ntBASIC16.63■□□□□ 0.25
PHOX2BQ99453 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.63■□□□□ 0.25
PHOX2BQ99453 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.63■□□□□ 0.25
PHOX2BQ99453 MIR5572-201ENST00000583188 137 ntBASIC16.63■□□□□ 0.25
PHOX2BQ99453 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
PHOX2BQ99453 RN7SL828P-201ENST00000607615 303 ntBASIC16.63■□□□□ 0.25
PHOX2BQ99453 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.63■□□□□ 0.25
PHOX2BQ99453 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
PHOX2BQ99453 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.63■□□□□ 0.25
PHOX2BQ99453 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
PHOX2BQ99453 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.63■□□□□ 0.25
PHOX2BQ99453 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 AL035456.1-201ENST00000456064 1369 ntBASIC16.63■□□□□ 0.25
PHOX2BQ99453 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PHOX2BQ99453 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 LINC01090-202ENST00000434418 560 ntTSL 5 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 CSF2RBP1-201ENST00000447905 391 ntBASIC16.62■□□□□ 0.25
PHOX2BQ99453 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 PFN1P12-201ENST00000455938 534 ntBASIC16.62■□□□□ 0.25
PHOX2BQ99453 RNA5SP412-201ENST00000516234 123 ntBASIC16.62■□□□□ 0.25
PHOX2BQ99453 DUTP2-201ENST00000519164 463 ntBASIC16.62■□□□□ 0.25
PHOX2BQ99453 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 AC044860.1-202ENST00000559481 777 ntBASIC16.62■□□□□ 0.25
PHOX2BQ99453 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 MIR4706-201ENST00000582134 82 ntBASIC16.62■□□□□ 0.25
PHOX2BQ99453 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 AC018665.1-201ENST00000622927 1362 ntBASIC16.62■□□□□ 0.25
PHOX2BQ99453 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.62■□□□□ 0.25
PHOX2BQ99453 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PHOX2BQ99453 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PHOX2BQ99453 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PHOX2BQ99453 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
PHOX2BQ99453 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PHOX2BQ99453 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms