Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RC3H1Q5TC82 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC20.4■□□□□ 0.86
RC3H1Q5TC82 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC20.4■□□□□ 0.86
RC3H1Q5TC82 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC20.4■□□□□ 0.86
RC3H1Q5TC82 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
RC3H1Q5TC82 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RC3H1Q5TC82 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
RC3H1Q5TC82 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RC3H1Q5TC82 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC20.39■□□□□ 0.86
RC3H1Q5TC82 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RC3H1Q5TC82 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
RC3H1Q5TC82 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 KRT8P37-201ENST00000451609 1420 ntBASIC20.39■□□□□ 0.85
RC3H1Q5TC82 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 FAM21FP-201ENST00000426241 1131 ntBASIC20.39■□□□□ 0.85
RC3H1Q5TC82 TARDBPP1-201ENST00000442013 1203 ntBASIC20.39■□□□□ 0.85
RC3H1Q5TC82 ELP6-209ENST00000446787 894 ntTSL 3 BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 PP12613-201ENST00000424958 2230 ntBASIC20.39■□□□□ 0.85
RC3H1Q5TC82 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RC3H1Q5TC82 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 NOC2LP2-201ENST00000407594 1944 ntBASIC20.38■□□□□ 0.85
RC3H1Q5TC82 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 BRWD1P1-201ENST00000401091 371 ntBASIC20.38■□□□□ 0.85
RC3H1Q5TC82 NME4-207ENST00000450036 985 ntTSL 3 BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 AC245100.5-201ENST00000452108 331 ntBASIC20.38■□□□□ 0.85
RC3H1Q5TC82 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 AC103810.3-201ENST00000583567 96 ntBASIC20.38■□□□□ 0.85
RC3H1Q5TC82 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
RC3H1Q5TC82 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 AC134915.1-201ENST00000426461 574 ntBASIC20.37■□□□□ 0.85
RC3H1Q5TC82 RPL28-203ENST00000428193 573 ntTSL 2 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 RPL28-207ENST00000558815 616 ntTSL 2 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 AC243562.2-201ENST00000561247 970 ntBASIC20.37■□□□□ 0.85
RC3H1Q5TC82 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.37■□□□□ 0.85
RC3H1Q5TC82 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC20.37■□□□□ 0.85
RC3H1Q5TC82 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms