Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC18.93■□□□□ 0.62
CTCFP49711 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC18.93■□□□□ 0.62
CTCFP49711 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.93■□□□□ 0.62
CTCFP49711 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC18.93■□□□□ 0.62
CTCFP49711 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC18.93■□□□□ 0.62
CTCFP49711 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC18.93■□□□□ 0.62
CTCFP49711 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC18.93■□□□□ 0.62
CTCFP49711 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC18.93■□□□□ 0.62
CTCFP49711 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC18.93■□□□□ 0.62
CTCFP49711 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC18.93■□□□□ 0.62
CTCFP49711 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.93■□□□□ 0.62
CTCFP49711 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
CTCFP49711 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 AC138028.4-201ENST00000564984 1845 ntBASIC18.93■□□□□ 0.62
CTCFP49711 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CTCFP49711 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
CTCFP49711 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CTCFP49711 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.92■□□□□ 0.62
CTCFP49711 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTCFP49711 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTCFP49711 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.92■□□□□ 0.62
CTCFP49711 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTCFP49711 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTCFP49711 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC18.92■□□□□ 0.62
CTCFP49711 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTCFP49711 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CTCFP49711 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CTCFP49711 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CTCFP49711 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.92■□□□□ 0.62
CTCFP49711 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC18.92■□□□□ 0.62
CTCFP49711 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.92■□□□□ 0.62
CTCFP49711 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC18.92■□□□□ 0.62
CTCFP49711 TIMM17BP1-201ENST00000545713 516 ntBASIC18.92■□□□□ 0.62
CTCFP49711 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC18.92■□□□□ 0.62
CTCFP49711 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC18.92■□□□□ 0.62
CTCFP49711 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTCFP49711 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.92■□□□□ 0.62
CTCFP49711 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CTCFP49711 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CTCFP49711 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
CTCFP49711 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTCFP49711 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTCFP49711 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTCFP49711 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CTCFP49711 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTCFP49711 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CTCFP49711 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.91■□□□□ 0.62
CTCFP49711 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.91■□□□□ 0.62
CTCFP49711 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC18.91■□□□□ 0.62
CTCFP49711 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 FNTAP2-201ENST00000430308 634 ntBASIC18.91■□□□□ 0.62
CTCFP49711 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC18.91■□□□□ 0.62
CTCFP49711 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
CTCFP49711 MIR4492-201ENST00000581627 80 ntBASIC18.91■□□□□ 0.62
CTCFP49711 AC133539.2-201ENST00000604757 467 ntBASIC18.91■□□□□ 0.62
CTCFP49711 MIR6069-201ENST00000620069 79 ntBASIC18.91■□□□□ 0.62
CTCFP49711 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
CTCFP49711 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
CTCFP49711 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.91■□□□□ 0.62
CTCFP49711 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.91■□□□□ 0.62
CTCFP49711 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CTCFP49711 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
CTCFP49711 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.9■□□□□ 0.62
CTCFP49711 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CTCFP49711 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CTCFP49711 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms