Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC24.2■■□□□ 1.46
RAPGEF3O95398 GRN-214ENST00000589265 1632 ntTSL 5 BASIC24.2■■□□□ 1.46
RAPGEF3O95398 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
RAPGEF3O95398 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC24.2■■□□□ 1.46
RAPGEF3O95398 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC24.19■■□□□ 1.46
RAPGEF3O95398 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC24.19■■□□□ 1.46
RAPGEF3O95398 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
RAPGEF3O95398 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC24.19■■□□□ 1.46
RAPGEF3O95398 KRT8P37-201ENST00000451609 1420 ntBASIC24.19■■□□□ 1.46
RAPGEF3O95398 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
RAPGEF3O95398 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
RAPGEF3O95398 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
RAPGEF3O95398 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC24.19■■□□□ 1.46
RAPGEF3O95398 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC24.19■■□□□ 1.46
RAPGEF3O95398 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
RAPGEF3O95398 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
RAPGEF3O95398 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC24.19■■□□□ 1.46
RAPGEF3O95398 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
RAPGEF3O95398 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
RAPGEF3O95398 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC24.19■■□□□ 1.46
RAPGEF3O95398 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC24.19■■□□□ 1.46
RAPGEF3O95398 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
RAPGEF3O95398 MBP-227ENST00000526111 581 ntTSL 4 BASIC24.19■■□□□ 1.46
RAPGEF3O95398 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
RAPGEF3O95398 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
RAPGEF3O95398 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
RAPGEF3O95398 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC24.19■■□□□ 1.46
RAPGEF3O95398 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
RAPGEF3O95398 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
RAPGEF3O95398 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
RAPGEF3O95398 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
RAPGEF3O95398 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
RAPGEF3O95398 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
RAPGEF3O95398 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
RAPGEF3O95398 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
RAPGEF3O95398 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC24.18■■□□□ 1.46
RAPGEF3O95398 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
RAPGEF3O95398 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
RAPGEF3O95398 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC24.18■■□□□ 1.46
RAPGEF3O95398 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC24.18■■□□□ 1.46
RAPGEF3O95398 TSACC-208ENST00000481479 741 ntTSL 2 BASIC24.18■■□□□ 1.46
RAPGEF3O95398 RPL13AP25-201ENST00000484130 612 ntBASIC24.18■■□□□ 1.46
RAPGEF3O95398 FADS2-212ENST00000522639 360 ntTSL 5 BASIC24.18■■□□□ 1.46
RAPGEF3O95398 FADS2-215ENST00000574708 385 ntTSL 3 BASIC24.18■■□□□ 1.46
RAPGEF3O95398 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
RAPGEF3O95398 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
RAPGEF3O95398 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
RAPGEF3O95398 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC24.18■■□□□ 1.46
RAPGEF3O95398 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
RAPGEF3O95398 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
RAPGEF3O95398 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
RAPGEF3O95398 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
RAPGEF3O95398 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
RAPGEF3O95398 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC24.18■■□□□ 1.46
RAPGEF3O95398 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
RAPGEF3O95398 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
RAPGEF3O95398 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC24.18■■□□□ 1.46
RAPGEF3O95398 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
RAPGEF3O95398 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC24.17■■□□□ 1.46
RAPGEF3O95398 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
RAPGEF3O95398 AC006001.1-201ENST00000325130 474 ntBASIC24.17■■□□□ 1.46
RAPGEF3O95398 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
RAPGEF3O95398 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
RAPGEF3O95398 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC24.17■■□□□ 1.46
RAPGEF3O95398 AC104457.1-201ENST00000401024 814 ntBASIC24.17■■□□□ 1.46
RAPGEF3O95398 TOMM22P5-201ENST00000416399 439 ntBASIC24.17■■□□□ 1.46
RAPGEF3O95398 C2orf27AP3-201ENST00000434123 579 ntBASIC24.17■■□□□ 1.46
RAPGEF3O95398 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC24.17■■□□□ 1.46
RAPGEF3O95398 EEF1DP4-201ENST00000446006 880 ntBASIC24.17■■□□□ 1.46
RAPGEF3O95398 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC24.17■■□□□ 1.46
RAPGEF3O95398 AHRR-211ENST00000515206 462 ntTSL 5 BASIC24.17■■□□□ 1.46
RAPGEF3O95398 AL354718.3-201ENST00000616414 581 ntBASIC24.17■■□□□ 1.46
RAPGEF3O95398 CR382287.1-201ENST00000623954 586 ntBASIC24.17■■□□□ 1.46
RAPGEF3O95398 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC24.17■■□□□ 1.46
RAPGEF3O95398 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC24.17■■□□□ 1.46
RAPGEF3O95398 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
RAPGEF3O95398 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
RAPGEF3O95398 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
RAPGEF3O95398 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
RAPGEF3O95398 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC24.16■■□□□ 1.46
RAPGEF3O95398 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC24.16■■□□□ 1.46
RAPGEF3O95398 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
RAPGEF3O95398 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
RAPGEF3O95398 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
RAPGEF3O95398 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
RAPGEF3O95398 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
RAPGEF3O95398 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC24.16■■□□□ 1.46
RAPGEF3O95398 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
RAPGEF3O95398 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC24.16■■□□□ 1.46
RAPGEF3O95398 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC24.16■■□□□ 1.46
RAPGEF3O95398 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC24.16■■□□□ 1.46
RAPGEF3O95398 ACR-203ENST00000529621 708 ntTSL 5 BASIC24.16■■□□□ 1.46
RAPGEF3O95398 MIR3619-201ENST00000579667 83 ntBASIC24.16■■□□□ 1.46
RAPGEF3O95398 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC24.16■■□□□ 1.46
RAPGEF3O95398 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC24.16■■□□□ 1.46
RAPGEF3O95398 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC24.16■■□□□ 1.46
RAPGEF3O95398 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC24.16■■□□□ 1.46
RAPGEF3O95398 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC24.16■■□□□ 1.46
RAPGEF3O95398 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC24.16■■□□□ 1.46
RAPGEF3O95398 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC24.16■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms