Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC15.31■□□□□ 0.04
PRKNO60260 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
PRKNO60260 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.31■□□□□ 0.04
PRKNO60260 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.31■□□□□ 0.04
PRKNO60260 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.31■□□□□ 0.04
PRKNO60260 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PRKNO60260 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.31■□□□□ 0.04
PRKNO60260 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
PRKNO60260 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
PRKNO60260 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PRKNO60260 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.3■□□□□ 0.04
PRKNO60260 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.3■□□□□ 0.04
PRKNO60260 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PRKNO60260 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.3■□□□□ 0.04
PRKNO60260 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 MIR346-201ENST00000362234 95 ntBASIC15.3■□□□□ 0.04
PRKNO60260 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
PRKNO60260 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.3■□□□□ 0.04
PRKNO60260 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PRKNO60260 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.3■□□□□ 0.04
PRKNO60260 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.3■□□□□ 0.04
PRKNO60260 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.3■□□□□ 0.04
PRKNO60260 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
PRKNO60260 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.3■□□□□ 0.04
PRKNO60260 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.3■□□□□ 0.04
PRKNO60260 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 AC073439.1-201ENST00000624121 1774 ntBASIC15.3■□□□□ 0.04
PRKNO60260 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC15.3■□□□□ 0.04
PRKNO60260 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
PRKNO60260 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PRKNO60260 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PRKNO60260 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
PRKNO60260 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC15.29■□□□□ 0.04
PRKNO60260 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.29■□□□□ 0.04
PRKNO60260 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.29■□□□□ 0.04
PRKNO60260 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 PCGF3-213ENST00000620529 1899 ntBASIC15.29■□□□□ 0.04
PRKNO60260 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PRKNO60260 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.29■□□□□ 0.04
PRKNO60260 FOXO1B-201ENST00000504678 1527 ntBASIC15.29■□□□□ 0.04
PRKNO60260 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.29■□□□□ 0.04
PRKNO60260 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.29■□□□□ 0.04
PRKNO60260 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.29■□□□□ 0.04
PRKNO60260 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.29■□□□□ 0.04
PRKNO60260 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.29■□□□□ 0.04
PRKNO60260 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.29■□□□□ 0.04
PRKNO60260 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.29■□□□□ 0.04
PRKNO60260 HLA-J-203ENST00000494367 1087 ntBASIC15.29■□□□□ 0.04
PRKNO60260 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
PRKNO60260 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
PRKNO60260 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.29■□□□□ 0.04
PRKNO60260 KRT8P23-201ENST00000560090 1207 ntBASIC15.29■□□□□ 0.04
PRKNO60260 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC15.29■□□□□ 0.04
PRKNO60260 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.29■□□□□ 0.04
PRKNO60260 LINC00628-201ENST00000628516 1289 ntBASIC15.29■□□□□ 0.04
PRKNO60260 AC084121.4-201ENST00000641598 221 ntBASIC15.29■□□□□ 0.04
PRKNO60260 AF228730.8-201ENST00000642140 221 ntBASIC15.29■□□□□ 0.04
PRKNO60260 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PRKNO60260 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms