Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC30.55■■■□□ 2.48
USP42Q9H9J4 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
USP42Q9H9J4 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC30.54■■■□□ 2.48
USP42Q9H9J4 NALT1-201ENST00000429224 738 ntTSL 5 BASIC30.54■■■□□ 2.48
USP42Q9H9J4 RPP21-222ENST00000433076 577 ntTSL 2 BASIC30.54■■■□□ 2.48
USP42Q9H9J4 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC30.54■■■□□ 2.48
USP42Q9H9J4 RALB-208ENST00000631312 311 ntTSL 5 BASIC30.54■■■□□ 2.48
USP42Q9H9J4 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC30.54■■■□□ 2.48
USP42Q9H9J4 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
USP42Q9H9J4 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
USP42Q9H9J4 AL121749.1-202ENST00000609313 2153 ntBASIC30.53■■■□□ 2.48
USP42Q9H9J4 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC30.53■■■□□ 2.48
USP42Q9H9J4 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC30.53■■■□□ 2.48
USP42Q9H9J4 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
USP42Q9H9J4 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC30.52■■■□□ 2.48
USP42Q9H9J4 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
USP42Q9H9J4 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
USP42Q9H9J4 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC30.52■■■□□ 2.48
USP42Q9H9J4 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
USP42Q9H9J4 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.48
USP42Q9H9J4 MIR4281-201ENST00000580852 62 ntBASIC30.51■■■□□ 2.48
USP42Q9H9J4 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
USP42Q9H9J4 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC30.51■■■□□ 2.47
USP42Q9H9J4 SRR-208ENST00000576848 588 ntTSL 4 BASIC30.5■■■□□ 2.47
USP42Q9H9J4 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC30.5■■■□□ 2.47
USP42Q9H9J4 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC30.5■■■□□ 2.47
USP42Q9H9J4 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC30.5■■■□□ 2.47
USP42Q9H9J4 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC30.49■■■□□ 2.47
USP42Q9H9J4 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
USP42Q9H9J4 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
USP42Q9H9J4 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC30.49■■■□□ 2.47
USP42Q9H9J4 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC30.49■■■□□ 2.47
USP42Q9H9J4 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC30.49■■■□□ 2.47
USP42Q9H9J4 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
USP42Q9H9J4 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
USP42Q9H9J4 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC30.48■■■□□ 2.47
USP42Q9H9J4 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC30.48■■■□□ 2.47
USP42Q9H9J4 AL117332.1-201ENST00000622628 974 ntBASIC30.48■■■□□ 2.47
USP42Q9H9J4 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC30.48■■■□□ 2.47
USP42Q9H9J4 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
USP42Q9H9J4 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
USP42Q9H9J4 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC30.47■■■□□ 2.47
USP42Q9H9J4 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC30.47■■■□□ 2.47
USP42Q9H9J4 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC30.47■■■□□ 2.47
USP42Q9H9J4 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
USP42Q9H9J4 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
USP42Q9H9J4 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
USP42Q9H9J4 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC30.47■■■□□ 2.47
USP42Q9H9J4 AL136116.3-201ENST00000402907 1138 ntBASIC30.47■■■□□ 2.47
USP42Q9H9J4 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC30.47■■■□□ 2.47
USP42Q9H9J4 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC30.46■■■□□ 2.47
USP42Q9H9J4 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
USP42Q9H9J4 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC30.45■■■□□ 2.47
USP42Q9H9J4 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
USP42Q9H9J4 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC30.45■■■□□ 2.46
USP42Q9H9J4 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
USP42Q9H9J4 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
USP42Q9H9J4 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC30.45■■■□□ 2.46
USP42Q9H9J4 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC30.45■■■□□ 2.46
USP42Q9H9J4 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
USP42Q9H9J4 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC30.44■■■□□ 2.46
USP42Q9H9J4 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
USP42Q9H9J4 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
USP42Q9H9J4 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC30.44■■■□□ 2.46
USP42Q9H9J4 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
USP42Q9H9J4 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC30.44■■■□□ 2.46
USP42Q9H9J4 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC30.43■■■□□ 2.46
USP42Q9H9J4 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC30.43■■■□□ 2.46
USP42Q9H9J4 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC30.43■■■□□ 2.46
USP42Q9H9J4 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC30.43■■■□□ 2.46
USP42Q9H9J4 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC30.43■■■□□ 2.46
USP42Q9H9J4 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC30.43■■■□□ 2.46
USP42Q9H9J4 MIR3621-201ENST00000580529 85 ntBASIC30.43■■■□□ 2.46
USP42Q9H9J4 AC110285.6-201ENST00000617652 491 ntBASIC30.43■■■□□ 2.46
USP42Q9H9J4 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
USP42Q9H9J4 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
USP42Q9H9J4 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
USP42Q9H9J4 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC30.42■■■□□ 2.46
USP42Q9H9J4 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
USP42Q9H9J4 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC30.41■■■□□ 2.46
USP42Q9H9J4 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
USP42Q9H9J4 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC30.41■■■□□ 2.46
USP42Q9H9J4 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
USP42Q9H9J4 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC30.4■■■□□ 2.46
USP42Q9H9J4 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC30.4■■■□□ 2.46
USP42Q9H9J4 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC30.4■■■□□ 2.46
USP42Q9H9J4 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC30.4■■■□□ 2.46
USP42Q9H9J4 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC30.4■■■□□ 2.46
USP42Q9H9J4 AC010997.5-201ENST00000609182 354 ntBASIC30.4■■■□□ 2.46
USP42Q9H9J4 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC30.39■■■□□ 2.46
USP42Q9H9J4 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC30.39■■■□□ 2.46
USP42Q9H9J4 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC30.39■■■□□ 2.46
USP42Q9H9J4 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
USP42Q9H9J4 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
USP42Q9H9J4 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC30.39■■■□□ 2.46
USP42Q9H9J4 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC30.39■■■□□ 2.46
USP42Q9H9J4 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC30.39■■■□□ 2.46
USP42Q9H9J4 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC30.38■■■□□ 2.45
USP42Q9H9J4 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
USP42Q9H9J4 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms