Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIMD2Q9BT23 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIMD2Q9BT23 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIMD2Q9BT23 HES4-202ENST00000428771 1040 ntTSL 2 BASIC13.97□□□□□ -0.17
LIMD2Q9BT23 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC13.97□□□□□ -0.17
LIMD2Q9BT23 MIR3960-201ENST00000583311 91 ntBASIC13.97□□□□□ -0.17
LIMD2Q9BT23 MED25-210ENST00000612854 801 ntTSL 5 BASIC13.97□□□□□ -0.17
LIMD2Q9BT23 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LIMD2Q9BT23 MED25-214ENST00000622402 642 ntTSL 5 BASIC13.97□□□□□ -0.17
LIMD2Q9BT23 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIMD2Q9BT23 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIMD2Q9BT23 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIMD2Q9BT23 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIMD2Q9BT23 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
LIMD2Q9BT23 PKD1P6-201ENST00000343738 4769 ntBASIC13.97□□□□□ -0.17
LIMD2Q9BT23 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIMD2Q9BT23 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIMD2Q9BT23 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LIMD2Q9BT23 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIMD2Q9BT23 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC13.96□□□□□ -0.17
LIMD2Q9BT23 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIMD2Q9BT23 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC13.96□□□□□ -0.17
LIMD2Q9BT23 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LIMD2Q9BT23 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIMD2Q9BT23 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC13.96□□□□□ -0.17
LIMD2Q9BT23 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC13.96□□□□□ -0.17
LIMD2Q9BT23 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC13.96□□□□□ -0.17
LIMD2Q9BT23 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LIMD2Q9BT23 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIMD2Q9BT23 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LIMD2Q9BT23 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIMD2Q9BT23 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
LIMD2Q9BT23 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIMD2Q9BT23 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIMD2Q9BT23 AC010501.1-201ENST00000606270 1962 ntBASIC13.95□□□□□ -0.18
LIMD2Q9BT23 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC13.95□□□□□ -0.18
LIMD2Q9BT23 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIMD2Q9BT23 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIMD2Q9BT23 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIMD2Q9BT23 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC13.95□□□□□ -0.18
LIMD2Q9BT23 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
LIMD2Q9BT23 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIMD2Q9BT23 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
LIMD2Q9BT23 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIMD2Q9BT23 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC13.94□□□□□ -0.18
LIMD2Q9BT23 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LIMD2Q9BT23 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LIMD2Q9BT23 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LIMD2Q9BT23 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LIMD2Q9BT23 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LIMD2Q9BT23 PFN2-211ENST00000489155 636 ntTSL 4 BASIC13.94□□□□□ -0.18
LIMD2Q9BT23 AC060814.1-201ENST00000554326 538 ntBASIC13.94□□□□□ -0.18
LIMD2Q9BT23 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC13.94□□□□□ -0.18
LIMD2Q9BT23 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC13.94□□□□□ -0.18
LIMD2Q9BT23 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIMD2Q9BT23 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
LIMD2Q9BT23 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LIMD2Q9BT23 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIMD2Q9BT23 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LIMD2Q9BT23 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIMD2Q9BT23 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIMD2Q9BT23 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
LIMD2Q9BT23 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIMD2Q9BT23 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC13.93□□□□□ -0.18
LIMD2Q9BT23 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC13.93□□□□□ -0.18
LIMD2Q9BT23 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
LIMD2Q9BT23 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC13.93□□□□□ -0.18
LIMD2Q9BT23 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LIMD2Q9BT23 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LIMD2Q9BT23 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LIMD2Q9BT23 CLDN5-201ENST00000403084 2357 ntBASIC13.93□□□□□ -0.18
LIMD2Q9BT23 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIMD2Q9BT23 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIMD2Q9BT23 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC13.92□□□□□ -0.18
LIMD2Q9BT23 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIMD2Q9BT23 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIMD2Q9BT23 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC13.92□□□□□ -0.18
LIMD2Q9BT23 CEP120-209ENST00000515110 606 ntTSL 3 BASIC13.92□□□□□ -0.18
LIMD2Q9BT23 AC022413.1-201ENST00000624602 984 ntBASIC13.92□□□□□ -0.18
LIMD2Q9BT23 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIMD2Q9BT23 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC13.92□□□□□ -0.18
LIMD2Q9BT23 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LIMD2Q9BT23 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIMD2Q9BT23 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIMD2Q9BT23 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LIMD2Q9BT23 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
LIMD2Q9BT23 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LIMD2Q9BT23 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC13.91□□□□□ -0.18
LIMD2Q9BT23 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIMD2Q9BT23 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIMD2Q9BT23 AC079834.2-201ENST00000609776 1949 ntBASIC13.91□□□□□ -0.18
LIMD2Q9BT23 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIMD2Q9BT23 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIMD2Q9BT23 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC13.91□□□□□ -0.18
LIMD2Q9BT23 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LIMD2Q9BT23 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LIMD2Q9BT23 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
LIMD2Q9BT23 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC13.91□□□□□ -0.18
LIMD2Q9BT23 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
LIMD2Q9BT23 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms