Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC23.78■■□□□ 1.4
LYSMD1Q96S90 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
LYSMD1Q96S90 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
LYSMD1Q96S90 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
LYSMD1Q96S90 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
LYSMD1Q96S90 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC23.77■■□□□ 1.4
LYSMD1Q96S90 AC010980.1-201ENST00000587192 1142 ntBASIC23.77■■□□□ 1.4
LYSMD1Q96S90 PVT1_1.1-201ENST00000615125 194 ntBASIC23.77■■□□□ 1.4
LYSMD1Q96S90 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
LYSMD1Q96S90 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC23.76■■□□□ 1.39
LYSMD1Q96S90 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LYSMD1Q96S90 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LYSMD1Q96S90 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.76■■□□□ 1.39
LYSMD1Q96S90 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
LYSMD1Q96S90 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
LYSMD1Q96S90 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
LYSMD1Q96S90 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.76■■□□□ 1.39
LYSMD1Q96S90 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LYSMD1Q96S90 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LYSMD1Q96S90 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.75■■□□□ 1.39
LYSMD1Q96S90 BEX3-202ENST00000372634 753 ntTSL 2 BASIC23.75■■□□□ 1.39
LYSMD1Q96S90 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
LYSMD1Q96S90 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC23.74■■□□□ 1.39
LYSMD1Q96S90 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
LYSMD1Q96S90 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
LYSMD1Q96S90 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
LYSMD1Q96S90 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
LYSMD1Q96S90 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
LYSMD1Q96S90 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC23.73■■□□□ 1.39
LYSMD1Q96S90 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
LYSMD1Q96S90 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
LYSMD1Q96S90 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC23.72■■□□□ 1.39
LYSMD1Q96S90 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC23.72■■□□□ 1.39
LYSMD1Q96S90 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
LYSMD1Q96S90 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
LYSMD1Q96S90 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
LYSMD1Q96S90 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
LYSMD1Q96S90 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
LYSMD1Q96S90 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC23.71■■□□□ 1.39
LYSMD1Q96S90 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
LYSMD1Q96S90 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
LYSMD1Q96S90 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
LYSMD1Q96S90 AC022616.5-201ENST00000518796 181 ntBASIC23.71■■□□□ 1.39
LYSMD1Q96S90 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC23.71■■□□□ 1.39
LYSMD1Q96S90 FOXO3B-201ENST00000395675 1928 ntBASIC23.71■■□□□ 1.39
LYSMD1Q96S90 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.39
LYSMD1Q96S90 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
LYSMD1Q96S90 AL592295.1-201ENST00000400984 884 ntBASIC23.7■■□□□ 1.38
LYSMD1Q96S90 MIR4508-201ENST00000584178 70 ntBASIC23.7■■□□□ 1.38
LYSMD1Q96S90 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
LYSMD1Q96S90 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.7■■□□□ 1.38
LYSMD1Q96S90 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
LYSMD1Q96S90 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC23.69■■□□□ 1.38
LYSMD1Q96S90 CEBPA-AS1-201ENST00000592982 2198 ntBASIC23.69■■□□□ 1.38
LYSMD1Q96S90 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
LYSMD1Q96S90 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC23.69■■□□□ 1.38
LYSMD1Q96S90 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
LYSMD1Q96S90 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
LYSMD1Q96S90 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
LYSMD1Q96S90 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
LYSMD1Q96S90 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC23.68■■□□□ 1.38
LYSMD1Q96S90 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC23.68■■□□□ 1.38
LYSMD1Q96S90 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
LYSMD1Q96S90 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
LYSMD1Q96S90 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
LYSMD1Q96S90 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC23.68■■□□□ 1.38
LYSMD1Q96S90 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
LYSMD1Q96S90 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
LYSMD1Q96S90 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
LYSMD1Q96S90 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
LYSMD1Q96S90 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
LYSMD1Q96S90 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
LYSMD1Q96S90 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
LYSMD1Q96S90 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
LYSMD1Q96S90 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
LYSMD1Q96S90 AC103834.1-201ENST00000520383 144 ntBASIC23.67■■□□□ 1.38
LYSMD1Q96S90 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC23.67■■□□□ 1.38
LYSMD1Q96S90 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC23.67■■□□□ 1.38
LYSMD1Q96S90 SLC6A10P-202ENST00000431994 2058 ntBASIC23.67■■□□□ 1.38
LYSMD1Q96S90 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
LYSMD1Q96S90 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.66■■□□□ 1.38
LYSMD1Q96S90 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC23.66■■□□□ 1.38
LYSMD1Q96S90 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
LYSMD1Q96S90 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC23.66■■□□□ 1.38
LYSMD1Q96S90 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
LYSMD1Q96S90 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
LYSMD1Q96S90 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
LYSMD1Q96S90 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
LYSMD1Q96S90 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC23.65■■□□□ 1.38
LYSMD1Q96S90 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
LYSMD1Q96S90 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
LYSMD1Q96S90 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.64■■□□□ 1.38
LYSMD1Q96S90 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC23.64■■□□□ 1.37
LYSMD1Q96S90 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
LYSMD1Q96S90 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
LYSMD1Q96S90 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.37
LYSMD1Q96S90 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC23.64■■□□□ 1.37
LYSMD1Q96S90 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
LYSMD1Q96S90 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
LYSMD1Q96S90 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms