Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 PKM-203ENST00000389093 2279 ntTSL 5 BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 AC137630.3-201ENST00000607245 391 ntBASIC7.25□□□□□ -1.25
SYNE1Q8NF91 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
SYNE1Q8NF91 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 AC022616.5-201ENST00000518796 181 ntBASIC7.24□□□□□ -1.25
SYNE1Q8NF91 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 AL136116.3-201ENST00000402907 1138 ntBASIC7.24□□□□□ -1.25
SYNE1Q8NF91 BX664725.1-201ENST00000438252 379 ntBASIC7.24□□□□□ -1.25
SYNE1Q8NF91 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 AC005837.3-201ENST00000612163 286 ntBASIC7.24□□□□□ -1.25
SYNE1Q8NF91 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC7.24□□□□□ -1.25
SYNE1Q8NF91 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 UNC93B8-201ENST00000511903 705 ntBASIC7.23□□□□□ -1.25
SYNE1Q8NF91 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 AL139246.5-201ENST00000606645 996 ntBASIC7.23□□□□□ -1.25
SYNE1Q8NF91 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 AC008406.3-201ENST00000620001 1374 ntBASIC7.23□□□□□ -1.25
SYNE1Q8NF91 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 AC021242.3-201ENST00000607598 1377 ntBASIC7.23□□□□□ -1.25
SYNE1Q8NF91 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
SYNE1Q8NF91 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 KRT16P3-201ENST00000439127 1283 ntBASIC7.22□□□□□ -1.25
SYNE1Q8NF91 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 KRT125P-201ENST00000546827 989 ntBASIC7.22□□□□□ -1.25
SYNE1Q8NF91 AC120024.1-201ENST00000562672 995 ntBASIC7.22□□□□□ -1.25
SYNE1Q8NF91 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
SYNE1Q8NF91 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC7.21□□□□□ -1.25
SYNE1Q8NF91 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC7.21□□□□□ -1.25
SYNE1Q8NF91 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
SYNE1Q8NF91 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
SYNE1Q8NF91 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
SYNE1Q8NF91 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
SYNE1Q8NF91 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.25
SYNE1Q8NF91 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.25
SYNE1Q8NF91 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
SYNE1Q8NF91 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC7.21□□□□□ -1.25
SYNE1Q8NF91 SNAI3-AS1-204ENST00000567997 2048 ntBASIC7.21□□□□□ -1.25
SYNE1Q8NF91 AL117332.1-201ENST00000622628 974 ntBASIC7.21□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms