Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SKA3Q8IX90 KRT18P10-201ENST00000388836 1287 ntBASIC20.92■□□□□ 0.94
SKA3Q8IX90 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SKA3Q8IX90 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
SKA3Q8IX90 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SKA3Q8IX90 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SKA3Q8IX90 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SKA3Q8IX90 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SKA3Q8IX90 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SKA3Q8IX90 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SKA3Q8IX90 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.91■□□□□ 0.94
SKA3Q8IX90 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SKA3Q8IX90 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SKA3Q8IX90 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SKA3Q8IX90 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
SKA3Q8IX90 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.9■□□□□ 0.94
SKA3Q8IX90 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.9■□□□□ 0.94
SKA3Q8IX90 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SKA3Q8IX90 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.89■□□□□ 0.93
SKA3Q8IX90 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SKA3Q8IX90 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.89■□□□□ 0.93
SKA3Q8IX90 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC20.89■□□□□ 0.93
SKA3Q8IX90 DUX4L18-201ENST00000553347 1267 ntBASIC20.89■□□□□ 0.93
SKA3Q8IX90 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.89■□□□□ 0.93
SKA3Q8IX90 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SKA3Q8IX90 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
SKA3Q8IX90 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SKA3Q8IX90 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
SKA3Q8IX90 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
SKA3Q8IX90 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.89■□□□□ 0.93
SKA3Q8IX90 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SKA3Q8IX90 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SKA3Q8IX90 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
SKA3Q8IX90 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SKA3Q8IX90 AC004987.1-201ENST00000428627 508 ntBASIC20.88■□□□□ 0.93
SKA3Q8IX90 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.88■□□□□ 0.93
SKA3Q8IX90 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.88■□□□□ 0.93
SKA3Q8IX90 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
SKA3Q8IX90 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.88■□□□□ 0.93
SKA3Q8IX90 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SKA3Q8IX90 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SKA3Q8IX90 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SKA3Q8IX90 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SKA3Q8IX90 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
SKA3Q8IX90 RPS2P7-201ENST00000447334 885 ntBASIC20.87■□□□□ 0.93
SKA3Q8IX90 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SKA3Q8IX90 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SKA3Q8IX90 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SKA3Q8IX90 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.87■□□□□ 0.93
SKA3Q8IX90 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SKA3Q8IX90 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SKA3Q8IX90 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.86■□□□□ 0.93
SKA3Q8IX90 ATP5G2P3-201ENST00000429083 425 ntBASIC20.86■□□□□ 0.93
SKA3Q8IX90 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC20.86■□□□□ 0.93
SKA3Q8IX90 CEBPA-AS1-201ENST00000592982 2198 ntBASIC20.86■□□□□ 0.93
SKA3Q8IX90 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SKA3Q8IX90 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.85■□□□□ 0.93
SKA3Q8IX90 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
SKA3Q8IX90 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SKA3Q8IX90 AC012354.3-201ENST00000623734 483 ntBASIC20.85■□□□□ 0.93
SKA3Q8IX90 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SKA3Q8IX90 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SKA3Q8IX90 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SKA3Q8IX90 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.85■□□□□ 0.93
SKA3Q8IX90 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SKA3Q8IX90 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SKA3Q8IX90 AC020928.2-201ENST00000588717 2197 ntBASIC20.85■□□□□ 0.93
SKA3Q8IX90 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SKA3Q8IX90 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SKA3Q8IX90 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SKA3Q8IX90 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SKA3Q8IX90 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SKA3Q8IX90 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SKA3Q8IX90 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.84■□□□□ 0.93
SKA3Q8IX90 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SKA3Q8IX90 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SKA3Q8IX90 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SKA3Q8IX90 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SKA3Q8IX90 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC20.83■□□□□ 0.93
SKA3Q8IX90 AC087393.1-201ENST00000582896 145 ntBASIC20.83■□□□□ 0.93
SKA3Q8IX90 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
SKA3Q8IX90 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.83■□□□□ 0.93
SKA3Q8IX90 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
SKA3Q8IX90 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC20.83■□□□□ 0.93
SKA3Q8IX90 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
SKA3Q8IX90 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.92
SKA3Q8IX90 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
SKA3Q8IX90 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SKA3Q8IX90 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SKA3Q8IX90 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SKA3Q8IX90 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SKA3Q8IX90 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SKA3Q8IX90 TSPY13P-201ENST00000338964 914 ntBASIC20.82■□□□□ 0.92
SKA3Q8IX90 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SKA3Q8IX90 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.82■□□□□ 0.92
SKA3Q8IX90 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.82■□□□□ 0.92
SKA3Q8IX90 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SKA3Q8IX90 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
SKA3Q8IX90 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SKA3Q8IX90 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms