Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC29.59■■■□□ 2.33
CCDC88AQ3V6T2 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC29.59■■■□□ 2.33
CCDC88AQ3V6T2 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC29.59■■■□□ 2.33
CCDC88AQ3V6T2 LGR4-203ENST00000480977 492 ntTSL 2 BASIC29.59■■■□□ 2.33
CCDC88AQ3V6T2 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC29.59■■■□□ 2.33
CCDC88AQ3V6T2 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC29.59■■■□□ 2.33
CCDC88AQ3V6T2 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC29.58■■■□□ 2.33
CCDC88AQ3V6T2 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC29.58■■■□□ 2.33
CCDC88AQ3V6T2 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
CCDC88AQ3V6T2 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC29.58■■■□□ 2.33
CCDC88AQ3V6T2 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
CCDC88AQ3V6T2 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC29.57■■■□□ 2.32
CCDC88AQ3V6T2 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
CCDC88AQ3V6T2 MTDHP2-201ENST00000601468 714 ntBASIC29.57■■■□□ 2.32
CCDC88AQ3V6T2 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC29.57■■■□□ 2.32
CCDC88AQ3V6T2 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC29.57■■■□□ 2.32
CCDC88AQ3V6T2 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC29.57■■■□□ 2.32
CCDC88AQ3V6T2 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC29.57■■■□□ 2.32
CCDC88AQ3V6T2 AC010997.5-201ENST00000609182 354 ntBASIC29.57■■■□□ 2.32
CCDC88AQ3V6T2 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC29.57■■■□□ 2.32
CCDC88AQ3V6T2 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
CCDC88AQ3V6T2 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC29.55■■■□□ 2.32
CCDC88AQ3V6T2 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
CCDC88AQ3V6T2 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
CCDC88AQ3V6T2 TK2-202ENST00000417693 1046 ntTSL 2 BASIC29.55■■■□□ 2.32
CCDC88AQ3V6T2 AC133561.4-201ENST00000566112 224 ntBASIC29.55■■■□□ 2.32
CCDC88AQ3V6T2 AC092666.2-201ENST00000613287 246 ntBASIC29.55■■■□□ 2.32
CCDC88AQ3V6T2 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
CCDC88AQ3V6T2 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC29.54■■■□□ 2.32
CCDC88AQ3V6T2 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC29.54■■■□□ 2.32
CCDC88AQ3V6T2 EXOG-217ENST00000630638 197 ntTSL 5 BASIC29.54■■■□□ 2.32
CCDC88AQ3V6T2 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
CCDC88AQ3V6T2 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC29.53■■■□□ 2.32
CCDC88AQ3V6T2 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CCDC88AQ3V6T2 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC29.52■■■□□ 2.32
CCDC88AQ3V6T2 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC29.52■■■□□ 2.32
CCDC88AQ3V6T2 AC142086.6-201ENST00000621154 1765 ntBASIC29.52■■■□□ 2.32
CCDC88AQ3V6T2 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
CCDC88AQ3V6T2 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC29.51■■■□□ 2.31
CCDC88AQ3V6T2 LSM4-201ENST00000252816 986 ntTSL 2 BASIC29.51■■■□□ 2.31
CCDC88AQ3V6T2 EBPL-204ENST00000378272 766 ntTSL 3 BASIC29.51■■■□□ 2.31
CCDC88AQ3V6T2 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC29.51■■■□□ 2.31
CCDC88AQ3V6T2 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC29.51■■■□□ 2.31
CCDC88AQ3V6T2 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC29.51■■■□□ 2.31
CCDC88AQ3V6T2 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC29.51■■■□□ 2.31
CCDC88AQ3V6T2 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC29.51■■■□□ 2.31
CCDC88AQ3V6T2 RASSF1-AS1-201ENST00000629828 790 ntBASIC29.51■■■□□ 2.31
CCDC88AQ3V6T2 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC29.5■■■□□ 2.31
CCDC88AQ3V6T2 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC29.5■■■□□ 2.31
CCDC88AQ3V6T2 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC29.5■■■□□ 2.31
CCDC88AQ3V6T2 AL356740.2-201ENST00000601559 647 ntBASIC29.5■■■□□ 2.31
CCDC88AQ3V6T2 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
CCDC88AQ3V6T2 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC29.49■■■□□ 2.31
CCDC88AQ3V6T2 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC29.49■■■□□ 2.31
CCDC88AQ3V6T2 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
CCDC88AQ3V6T2 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC29.49■■■□□ 2.31
CCDC88AQ3V6T2 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC29.49■■■□□ 2.31
CCDC88AQ3V6T2 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
CCDC88AQ3V6T2 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC29.49■■■□□ 2.31
CCDC88AQ3V6T2 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
CCDC88AQ3V6T2 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC29.48■■■□□ 2.31
CCDC88AQ3V6T2 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
CCDC88AQ3V6T2 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
CCDC88AQ3V6T2 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC29.48■■■□□ 2.31
CCDC88AQ3V6T2 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC29.48■■■□□ 2.31
CCDC88AQ3V6T2 AC135279.3-201ENST00000610945 1311 ntBASIC29.48■■■□□ 2.31
CCDC88AQ3V6T2 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC29.47■■■□□ 2.31
CCDC88AQ3V6T2 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC29.47■■■□□ 2.31
CCDC88AQ3V6T2 AC106739.1-201ENST00000617035 715 ntBASIC29.47■■■□□ 2.31
CCDC88AQ3V6T2 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
CCDC88AQ3V6T2 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
CCDC88AQ3V6T2 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC29.46■■■□□ 2.31
CCDC88AQ3V6T2 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC29.46■■■□□ 2.31
CCDC88AQ3V6T2 AC142472.1-201ENST00000612013 1741 ntBASIC29.46■■■□□ 2.31
CCDC88AQ3V6T2 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC29.46■■■□□ 2.31
CCDC88AQ3V6T2 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC29.46■■■□□ 2.31
CCDC88AQ3V6T2 AK3-203ENST00000447596 705 ntTSL 2 BASIC29.45■■■□□ 2.31
CCDC88AQ3V6T2 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
CCDC88AQ3V6T2 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
CCDC88AQ3V6T2 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
CCDC88AQ3V6T2 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC29.44■■■□□ 2.3
CCDC88AQ3V6T2 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC29.44■■■□□ 2.3
CCDC88AQ3V6T2 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
CCDC88AQ3V6T2 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
CCDC88AQ3V6T2 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC29.43■■■□□ 2.3
CCDC88AQ3V6T2 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
CCDC88AQ3V6T2 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC29.43■■■□□ 2.3
CCDC88AQ3V6T2 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
CCDC88AQ3V6T2 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
CCDC88AQ3V6T2 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC29.42■■■□□ 2.3
CCDC88AQ3V6T2 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC29.42■■■□□ 2.3
CCDC88AQ3V6T2 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC29.42■■■□□ 2.3
CCDC88AQ3V6T2 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
CCDC88AQ3V6T2 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC29.42■■■□□ 2.3
CCDC88AQ3V6T2 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC29.41■■■□□ 2.3
CCDC88AQ3V6T2 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC29.41■■■□□ 2.3
CCDC88AQ3V6T2 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC29.41■■■□□ 2.3
CCDC88AQ3V6T2 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC29.41■■■□□ 2.3
CCDC88AQ3V6T2 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
CCDC88AQ3V6T2 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC29.4■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms