Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
PRKDCP78527 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PRKDCP78527 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
PRKDCP78527 AF131216.4-201ENST00000638924 1588 ntBASIC17.66■□□□□ 0.42
PRKDCP78527 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PRKDCP78527 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PRKDCP78527 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PRKDCP78527 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PRKDCP78527 AC034268.1-201ENST00000441047 882 ntBASIC17.65■□□□□ 0.42
PRKDCP78527 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PRKDCP78527 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC17.65■□□□□ 0.42
PRKDCP78527 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
PRKDCP78527 HACD1-201ENST00000326961 773 ntTSL 2 BASIC17.64■□□□□ 0.41
PRKDCP78527 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
PRKDCP78527 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC17.64■□□□□ 0.41
PRKDCP78527 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PRKDCP78527 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC17.64■□□□□ 0.41
PRKDCP78527 MAG-206ENST00000597035 542 ntTSL 4 BASIC17.64■□□□□ 0.41
PRKDCP78527 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
PRKDCP78527 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PRKDCP78527 CD72-202ENST00000378430 585 ntTSL 3 BASIC17.64■□□□□ 0.41
PRKDCP78527 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC17.64■□□□□ 0.41
PRKDCP78527 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PRKDCP78527 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PRKDCP78527 ABHD17AP1-201ENST00000358206 933 ntBASIC17.63■□□□□ 0.41
PRKDCP78527 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
PRKDCP78527 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC17.63■□□□□ 0.41
PRKDCP78527 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PRKDCP78527 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PRKDCP78527 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PRKDCP78527 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PRKDCP78527 STOX2-205ENST00000513034 807 ntTSL 3 BASIC17.62■□□□□ 0.41
PRKDCP78527 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PRKDCP78527 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC17.62■□□□□ 0.41
PRKDCP78527 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
PRKDCP78527 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PRKDCP78527 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC17.62■□□□□ 0.41
PRKDCP78527 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
PRKDCP78527 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PRKDCP78527 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PRKDCP78527 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC17.62■□□□□ 0.41
PRKDCP78527 RASA4CP-201ENST00000424092 1398 ntBASIC17.61■□□□□ 0.41
PRKDCP78527 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
PRKDCP78527 ABCB10P3-201ENST00000561950 2166 ntBASIC17.61■□□□□ 0.41
PRKDCP78527 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC17.61■□□□□ 0.41
PRKDCP78527 GRAMD4P4-201ENST00000613563 1115 ntBASIC17.61■□□□□ 0.41
PRKDCP78527 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PRKDCP78527 AP004833.2-201ENST00000532228 1454 ntBASIC17.6■□□□□ 0.41
PRKDCP78527 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
PRKDCP78527 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PRKDCP78527 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PRKDCP78527 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
PRKDCP78527 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PRKDCP78527 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC17.59■□□□□ 0.41
PRKDCP78527 HLA-L-209ENST00000420110 1011 ntBASIC17.59■□□□□ 0.41
PRKDCP78527 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
PRKDCP78527 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
PRKDCP78527 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PRKDCP78527 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PRKDCP78527 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC17.59■□□□□ 0.41
PRKDCP78527 AC011551.1-201ENST00000614101 683 ntBASIC17.59■□□□□ 0.41
PRKDCP78527 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
PRKDCP78527 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC17.58■□□□□ 0.41
PRKDCP78527 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC17.58■□□□□ 0.41
PRKDCP78527 SLC47A1P1-202ENST00000449666 945 ntBASIC17.58■□□□□ 0.4
PRKDCP78527 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
PRKDCP78527 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC17.58■□□□□ 0.4
PRKDCP78527 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PRKDCP78527 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC17.58■□□□□ 0.4
PRKDCP78527 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
PRKDCP78527 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
PRKDCP78527 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC17.58■□□□□ 0.4
PRKDCP78527 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PRKDCP78527 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
PRKDCP78527 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PRKDCP78527 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC17.57■□□□□ 0.4
PRKDCP78527 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PRKDCP78527 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC17.57■□□□□ 0.4
PRKDCP78527 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
PRKDCP78527 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PRKDCP78527 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
PRKDCP78527 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC17.57■□□□□ 0.4
PRKDCP78527 CA15P2-201ENST00000611168 834 ntBASIC17.57■□□□□ 0.4
PRKDCP78527 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC17.56■□□□□ 0.4
PRKDCP78527 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PRKDCP78527 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
PRKDCP78527 DLX3-202ENST00000512495 834 ntTSL 2 BASIC17.56■□□□□ 0.4
PRKDCP78527 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
PRKDCP78527 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
PRKDCP78527 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC17.56■□□□□ 0.4
PRKDCP78527 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC17.56■□□□□ 0.4
PRKDCP78527 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PRKDCP78527 RHOF-204ENST00000537265 699 ntTSL 2 BASIC17.55■□□□□ 0.4
PRKDCP78527 AL031602.1-201ENST00000633169 911 ntBASIC17.55■□□□□ 0.4
PRKDCP78527 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PRKDCP78527 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PRKDCP78527 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC17.55■□□□□ 0.4
PRKDCP78527 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PRKDCP78527 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PRKDCP78527 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms