Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RARRES2P1-201ENST00000474487 481 ntBASIC26.96■■□□□ 1.91
CIITAP33076 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC26.96■■□□□ 1.91
CIITAP33076 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC26.96■■□□□ 1.91
CIITAP33076 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC26.96■■□□□ 1.91
CIITAP33076 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC26.96■■□□□ 1.91
CIITAP33076 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
CIITAP33076 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
CIITAP33076 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC26.95■■□□□ 1.9
CIITAP33076 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC26.95■■□□□ 1.9
CIITAP33076 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
CIITAP33076 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
CIITAP33076 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.9
CIITAP33076 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CIITAP33076 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.94■■□□□ 1.9
CIITAP33076 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC26.94■■□□□ 1.9
CIITAP33076 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
CIITAP33076 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CIITAP33076 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
CIITAP33076 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
CIITAP33076 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC26.93■■□□□ 1.9
CIITAP33076 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
CIITAP33076 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC26.93■■□□□ 1.9
CIITAP33076 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC26.93■■□□□ 1.9
CIITAP33076 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
CIITAP33076 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC26.92■■□□□ 1.9
CIITAP33076 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
CIITAP33076 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC26.92■■□□□ 1.9
CIITAP33076 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
CIITAP33076 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
CIITAP33076 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC26.92■■□□□ 1.9
CIITAP33076 AC022616.5-201ENST00000518796 181 ntBASIC26.91■■□□□ 1.9
CIITAP33076 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC26.91■■□□□ 1.9
CIITAP33076 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
CIITAP33076 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC26.91■■□□□ 1.9
CIITAP33076 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC26.9■■□□□ 1.9
CIITAP33076 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
CIITAP33076 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CIITAP33076 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC26.9■■□□□ 1.9
CIITAP33076 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CIITAP33076 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
CIITAP33076 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC26.89■■□□□ 1.9
CIITAP33076 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.9
CIITAP33076 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
CIITAP33076 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC26.89■■□□□ 1.9
CIITAP33076 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC26.89■■□□□ 1.89
CIITAP33076 KRT8P33-201ENST00000508125 1423 ntBASIC26.89■■□□□ 1.89
CIITAP33076 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CIITAP33076 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
CIITAP33076 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC26.88■■□□□ 1.89
CIITAP33076 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC26.88■■□□□ 1.89
CIITAP33076 AL592295.1-201ENST00000400984 884 ntBASIC26.88■■□□□ 1.89
CIITAP33076 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC26.88■■□□□ 1.89
CIITAP33076 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC26.88■■□□□ 1.89
CIITAP33076 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
CIITAP33076 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CIITAP33076 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC26.87■■□□□ 1.89
CIITAP33076 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CIITAP33076 YBX1P4-201ENST00000392794 808 ntBASIC26.87■■□□□ 1.89
CIITAP33076 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CIITAP33076 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
CIITAP33076 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
CIITAP33076 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
CIITAP33076 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
CIITAP33076 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC26.86■■□□□ 1.89
CIITAP33076 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC26.86■■□□□ 1.89
CIITAP33076 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
CIITAP33076 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC26.85■■□□□ 1.89
CIITAP33076 FOXO3B-201ENST00000395675 1928 ntBASIC26.85■■□□□ 1.89
CIITAP33076 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
CIITAP33076 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC26.85■■□□□ 1.89
CIITAP33076 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC26.85■■□□□ 1.89
CIITAP33076 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
CIITAP33076 AC103724.3-201ENST00000564481 992 ntBASIC26.84■■□□□ 1.89
CIITAP33076 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC26.84■■□□□ 1.89
CIITAP33076 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
CIITAP33076 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
CIITAP33076 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
CIITAP33076 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.89
CIITAP33076 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
CIITAP33076 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC26.83■■□□□ 1.89
CIITAP33076 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC26.83■■□□□ 1.89
CIITAP33076 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC26.83■■□□□ 1.89
CIITAP33076 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC26.83■■□□□ 1.89
CIITAP33076 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
CIITAP33076 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.89
CIITAP33076 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
CIITAP33076 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
CIITAP33076 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
CIITAP33076 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC26.82■■□□□ 1.88
CIITAP33076 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC26.82■■□□□ 1.88
CIITAP33076 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CIITAP33076 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CIITAP33076 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
CIITAP33076 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC26.81■■□□□ 1.88
CIITAP33076 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC26.81■■□□□ 1.88
CIITAP33076 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
CIITAP33076 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC26.81■■□□□ 1.88
CIITAP33076 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
CIITAP33076 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC26.8■■□□□ 1.88
CIITAP33076 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms