Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC21.64■■□□□ 1.05
FREM3P0C091 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
FREM3P0C091 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.64■■□□□ 1.05
FREM3P0C091 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
FREM3P0C091 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
FREM3P0C091 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC21.64■■□□□ 1.05
FREM3P0C091 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
FREM3P0C091 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.64■■□□□ 1.05
FREM3P0C091 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
FREM3P0C091 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.63■■□□□ 1.05
FREM3P0C091 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
FREM3P0C091 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
FREM3P0C091 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
FREM3P0C091 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.63■■□□□ 1.05
FREM3P0C091 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
FREM3P0C091 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.62■■□□□ 1.05
FREM3P0C091 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
FREM3P0C091 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
FREM3P0C091 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
FREM3P0C091 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.62■■□□□ 1.05
FREM3P0C091 AC103834.1-201ENST00000520383 144 ntBASIC21.62■■□□□ 1.05
FREM3P0C091 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
FREM3P0C091 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
FREM3P0C091 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.62■■□□□ 1.05
FREM3P0C091 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
FREM3P0C091 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
FREM3P0C091 AC020928.2-201ENST00000588717 2197 ntBASIC21.61■■□□□ 1.05
FREM3P0C091 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
FREM3P0C091 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
FREM3P0C091 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
FREM3P0C091 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.6■■□□□ 1.05
FREM3P0C091 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
FREM3P0C091 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.6■■□□□ 1.05
FREM3P0C091 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.59■■□□□ 1.05
FREM3P0C091 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.59■■□□□ 1.05
FREM3P0C091 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
FREM3P0C091 AC010501.1-201ENST00000606270 1962 ntBASIC21.59■■□□□ 1.05
FREM3P0C091 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
FREM3P0C091 DUSP8P4-201ENST00000399538 1761 ntBASIC21.59■■□□□ 1.05
FREM3P0C091 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
FREM3P0C091 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
FREM3P0C091 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
FREM3P0C091 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
FREM3P0C091 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
FREM3P0C091 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
FREM3P0C091 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
FREM3P0C091 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
FREM3P0C091 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC21.58■■□□□ 1.05
FREM3P0C091 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC21.58■■□□□ 1.05
FREM3P0C091 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
FREM3P0C091 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
FREM3P0C091 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
FREM3P0C091 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
FREM3P0C091 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.58■■□□□ 1.04
FREM3P0C091 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
FREM3P0C091 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.58■■□□□ 1.04
FREM3P0C091 AL035685.1-201ENST00000636663 812 ntBASIC21.58■■□□□ 1.04
FREM3P0C091 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
FREM3P0C091 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
FREM3P0C091 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
FREM3P0C091 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC21.58■■□□□ 1.04
FREM3P0C091 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.57■■□□□ 1.04
FREM3P0C091 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
FREM3P0C091 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
FREM3P0C091 AC097639.1-201ENST00000565519 1891 ntBASIC21.57■■□□□ 1.04
FREM3P0C091 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
FREM3P0C091 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
FREM3P0C091 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
FREM3P0C091 AC145676.1-201ENST00000514988 2004 ntBASIC21.57■■□□□ 1.04
FREM3P0C091 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
FREM3P0C091 AC019171.1-201ENST00000601251 1056 ntBASIC21.56■■□□□ 1.04
FREM3P0C091 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
FREM3P0C091 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
FREM3P0C091 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
FREM3P0C091 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
FREM3P0C091 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.56■■□□□ 1.04
FREM3P0C091 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.56■■□□□ 1.04
FREM3P0C091 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.56■■□□□ 1.04
FREM3P0C091 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
FREM3P0C091 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
FREM3P0C091 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
FREM3P0C091 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
FREM3P0C091 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.55■■□□□ 1.04
FREM3P0C091 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC21.55■■□□□ 1.04
FREM3P0C091 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.55■■□□□ 1.04
FREM3P0C091 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.55■■□□□ 1.04
FREM3P0C091 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
FREM3P0C091 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.55■■□□□ 1.04
FREM3P0C091 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
FREM3P0C091 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
FREM3P0C091 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.54■■□□□ 1.04
FREM3P0C091 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.54■■□□□ 1.04
FREM3P0C091 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC21.54■■□□□ 1.04
FREM3P0C091 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.54■■□□□ 1.04
FREM3P0C091 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.54■■□□□ 1.04
FREM3P0C091 YBX1P4-201ENST00000392794 808 ntBASIC21.53■■□□□ 1.04
FREM3P0C091 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
FREM3P0C091 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
FREM3P0C091 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
FREM3P0C091 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms