Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
MSH4O15457 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
MSH4O15457 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC26.86■■□□□ 1.89
MSH4O15457 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC26.86■■□□□ 1.89
MSH4O15457 MIR4508-201ENST00000584178 70 ntBASIC26.86■■□□□ 1.89
MSH4O15457 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
MSH4O15457 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
MSH4O15457 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
MSH4O15457 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
MSH4O15457 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
MSH4O15457 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
MSH4O15457 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
MSH4O15457 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC26.85■■□□□ 1.89
MSH4O15457 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
MSH4O15457 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
MSH4O15457 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
MSH4O15457 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC26.84■■□□□ 1.89
MSH4O15457 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC26.84■■□□□ 1.89
MSH4O15457 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC26.84■■□□□ 1.89
MSH4O15457 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC26.84■■□□□ 1.89
MSH4O15457 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
MSH4O15457 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.83■■□□□ 1.89
MSH4O15457 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
MSH4O15457 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
MSH4O15457 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
MSH4O15457 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC26.83■■□□□ 1.89
MSH4O15457 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
MSH4O15457 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
MSH4O15457 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
MSH4O15457 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC26.82■■□□□ 1.88
MSH4O15457 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC26.82■■□□□ 1.88
MSH4O15457 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
MSH4O15457 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
MSH4O15457 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC26.81■■□□□ 1.88
MSH4O15457 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
MSH4O15457 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC26.81■■□□□ 1.88
MSH4O15457 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC26.81■■□□□ 1.88
MSH4O15457 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC26.81■■□□□ 1.88
MSH4O15457 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
MSH4O15457 YBX1P4-201ENST00000392794 808 ntBASIC26.8■■□□□ 1.88
MSH4O15457 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
MSH4O15457 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC26.8■■□□□ 1.88
MSH4O15457 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC26.8■■□□□ 1.88
MSH4O15457 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC26.8■■□□□ 1.88
MSH4O15457 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH4O15457 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH4O15457 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC26.79■■□□□ 1.88
MSH4O15457 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH4O15457 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
MSH4O15457 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
MSH4O15457 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
MSH4O15457 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
MSH4O15457 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC26.76■■□□□ 1.87
MSH4O15457 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC26.76■■□□□ 1.87
MSH4O15457 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
MSH4O15457 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC26.76■■□□□ 1.87
MSH4O15457 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC26.76■■□□□ 1.87
MSH4O15457 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
MSH4O15457 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC26.76■■□□□ 1.87
MSH4O15457 AC103724.3-201ENST00000564481 992 ntBASIC26.76■■□□□ 1.87
MSH4O15457 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC26.76■■□□□ 1.87
MSH4O15457 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
MSH4O15457 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
MSH4O15457 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC26.76■■□□□ 1.87
MSH4O15457 FOXO3B-201ENST00000395675 1928 ntBASIC26.75■■□□□ 1.87
MSH4O15457 AC022616.5-201ENST00000518796 181 ntBASIC26.75■■□□□ 1.87
MSH4O15457 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC26.75■■□□□ 1.87
MSH4O15457 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC26.75■■□□□ 1.87
MSH4O15457 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC26.74■■□□□ 1.87
MSH4O15457 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC26.74■■□□□ 1.87
MSH4O15457 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC26.74■■□□□ 1.87
MSH4O15457 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
MSH4O15457 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
MSH4O15457 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC26.74■■□□□ 1.87
MSH4O15457 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC26.74■■□□□ 1.87
MSH4O15457 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC26.74■■□□□ 1.87
MSH4O15457 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
MSH4O15457 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC26.74■■□□□ 1.87
MSH4O15457 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
MSH4O15457 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC26.73■■□□□ 1.87
MSH4O15457 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
MSH4O15457 AL592295.1-201ENST00000400984 884 ntBASIC26.73■■□□□ 1.87
MSH4O15457 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC26.73■■□□□ 1.87
MSH4O15457 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC26.73■■□□□ 1.87
MSH4O15457 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
MSH4O15457 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
MSH4O15457 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
MSH4O15457 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC26.72■■□□□ 1.87
MSH4O15457 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC26.72■■□□□ 1.87
MSH4O15457 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
MSH4O15457 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
MSH4O15457 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
MSH4O15457 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
MSH4O15457 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
MSH4O15457 AL451085.2-201ENST00000605085 799 ntBASIC26.71■■□□□ 1.87
MSH4O15457 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC26.7■■□□□ 1.87
MSH4O15457 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
MSH4O15457 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC26.7■■□□□ 1.87
MSH4O15457 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
MSH4O15457 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms