Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC019171.1-201ENST00000601251 1056 ntBASIC24.32■■□□□ 1.48
CBX4O00257 AL035685.1-201ENST00000636663 812 ntBASIC24.32■■□□□ 1.48
CBX4O00257 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CBX4O00257 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC24.31■■□□□ 1.48
CBX4O00257 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CBX4O00257 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CBX4O00257 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
CBX4O00257 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
CBX4O00257 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CBX4O00257 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
CBX4O00257 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CBX4O00257 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CBX4O00257 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
CBX4O00257 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
CBX4O00257 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC24.29■■□□□ 1.48
CBX4O00257 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC24.29■■□□□ 1.48
CBX4O00257 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC24.29■■□□□ 1.48
CBX4O00257 YBX1P4-201ENST00000392794 808 ntBASIC24.29■■□□□ 1.48
CBX4O00257 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CBX4O00257 AC097639.1-201ENST00000565519 1891 ntBASIC24.29■■□□□ 1.48
CBX4O00257 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
CBX4O00257 AC103834.1-201ENST00000520383 144 ntBASIC24.28■■□□□ 1.48
CBX4O00257 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC24.28■■□□□ 1.48
CBX4O00257 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
CBX4O00257 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC24.28■■□□□ 1.48
CBX4O00257 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
CBX4O00257 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
CBX4O00257 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
CBX4O00257 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
CBX4O00257 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
CBX4O00257 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC24.27■■□□□ 1.48
CBX4O00257 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
CBX4O00257 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
CBX4O00257 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CBX4O00257 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC24.27■■□□□ 1.48
CBX4O00257 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CBX4O00257 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CBX4O00257 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CBX4O00257 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CBX4O00257 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
CBX4O00257 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CBX4O00257 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC24.25■■□□□ 1.47
CBX4O00257 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CBX4O00257 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CBX4O00257 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
CBX4O00257 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC24.25■■□□□ 1.47
CBX4O00257 CREM-210ENST00000374721 2020 ntTSL 5 BASIC24.25■■□□□ 1.47
CBX4O00257 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC24.25■■□□□ 1.47
CBX4O00257 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC24.25■■□□□ 1.47
CBX4O00257 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CBX4O00257 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CBX4O00257 MIR4508-201ENST00000584178 70 ntBASIC24.24■■□□□ 1.47
CBX4O00257 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC24.24■■□□□ 1.47
CBX4O00257 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC24.24■■□□□ 1.47
CBX4O00257 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CBX4O00257 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC24.24■■□□□ 1.47
CBX4O00257 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CBX4O00257 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CBX4O00257 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CBX4O00257 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CBX4O00257 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CBX4O00257 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
CBX4O00257 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
CBX4O00257 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC24.23■■□□□ 1.47
CBX4O00257 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC24.23■■□□□ 1.47
CBX4O00257 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CBX4O00257 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
CBX4O00257 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CBX4O00257 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CBX4O00257 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CBX4O00257 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CBX4O00257 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CBX4O00257 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
CBX4O00257 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC24.21■■□□□ 1.47
CBX4O00257 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
CBX4O00257 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
CBX4O00257 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC24.2■■□□□ 1.47
CBX4O00257 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
CBX4O00257 TRIR-205ENST00000592273 783 ntTSL 3 BASIC24.2■■□□□ 1.46
CBX4O00257 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
CBX4O00257 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC24.2■■□□□ 1.46
CBX4O00257 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
CBX4O00257 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CBX4O00257 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
CBX4O00257 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC24.18■■□□□ 1.46
CBX4O00257 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC24.18■■□□□ 1.46
CBX4O00257 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
CBX4O00257 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC24.18■■□□□ 1.46
CBX4O00257 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
CBX4O00257 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC24.18■■□□□ 1.46
CBX4O00257 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
CBX4O00257 AC022616.5-201ENST00000518796 181 ntBASIC24.17■■□□□ 1.46
CBX4O00257 AC103724.3-201ENST00000564481 992 ntBASIC24.17■■□□□ 1.46
CBX4O00257 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
CBX4O00257 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
CBX4O00257 FOXO3B-201ENST00000395675 1928 ntBASIC24.16■■□□□ 1.46
CBX4O00257 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CBX4O00257 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CBX4O00257 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
CBX4O00257 AL592295.1-201ENST00000400984 884 ntBASIC24.16■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms