Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.82■■□□□ 1.08
CPSF4LA6NMK7 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
CPSF4LA6NMK7 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CPSF4LA6NMK7 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CPSF4LA6NMK7 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CPSF4LA6NMK7 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CPSF4LA6NMK7 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.81■■□□□ 1.08
CPSF4LA6NMK7 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CPSF4LA6NMK7 ECEL1P2-201ENST00000461596 1295 ntBASIC21.81■■□□□ 1.08
CPSF4LA6NMK7 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CPSF4LA6NMK7 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
CPSF4LA6NMK7 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
CPSF4LA6NMK7 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CPSF4LA6NMK7 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CPSF4LA6NMK7 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CPSF4LA6NMK7 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CPSF4LA6NMK7 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CPSF4LA6NMK7 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CPSF4LA6NMK7 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CPSF4LA6NMK7 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CPSF4LA6NMK7 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CPSF4LA6NMK7 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CPSF4LA6NMK7 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.79■■□□□ 1.08
CPSF4LA6NMK7 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CPSF4LA6NMK7 RP9P-202ENST00000450133 1212 ntBASIC21.78■■□□□ 1.08
CPSF4LA6NMK7 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CPSF4LA6NMK7 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.78■■□□□ 1.08
CPSF4LA6NMK7 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CPSF4LA6NMK7 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CPSF4LA6NMK7 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
CPSF4LA6NMK7 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CPSF4LA6NMK7 AP003733.4-201ENST00000623785 1697 ntBASIC21.77■■□□□ 1.08
CPSF4LA6NMK7 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CPSF4LA6NMK7 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
CPSF4LA6NMK7 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CPSF4LA6NMK7 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CPSF4LA6NMK7 AC093536.1-201ENST00000569153 554 ntBASIC21.76■■□□□ 1.07
CPSF4LA6NMK7 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.76■■□□□ 1.07
CPSF4LA6NMK7 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.76■■□□□ 1.07
CPSF4LA6NMK7 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CPSF4LA6NMK7 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CPSF4LA6NMK7 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
CPSF4LA6NMK7 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.75■■□□□ 1.07
CPSF4LA6NMK7 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CPSF4LA6NMK7 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
CPSF4LA6NMK7 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.75■■□□□ 1.07
CPSF4LA6NMK7 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
CPSF4LA6NMK7 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CPSF4LA6NMK7 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CPSF4LA6NMK7 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CPSF4LA6NMK7 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CPSF4LA6NMK7 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
CPSF4LA6NMK7 LINC01124-201ENST00000409786 2117 ntBASIC21.74■■□□□ 1.07
CPSF4LA6NMK7 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.74■■□□□ 1.07
CPSF4LA6NMK7 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CPSF4LA6NMK7 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
CPSF4LA6NMK7 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC21.74■■□□□ 1.07
CPSF4LA6NMK7 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CPSF4LA6NMK7 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CPSF4LA6NMK7 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
CPSF4LA6NMK7 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CPSF4LA6NMK7 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.73■■□□□ 1.07
CPSF4LA6NMK7 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC21.73■■□□□ 1.07
CPSF4LA6NMK7 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CPSF4LA6NMK7 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
CPSF4LA6NMK7 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
CPSF4LA6NMK7 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CPSF4LA6NMK7 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.73■■□□□ 1.07
CPSF4LA6NMK7 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.73■■□□□ 1.07
CPSF4LA6NMK7 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.73■■□□□ 1.07
CPSF4LA6NMK7 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CPSF4LA6NMK7 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CPSF4LA6NMK7 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CPSF4LA6NMK7 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CPSF4LA6NMK7 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CPSF4LA6NMK7 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CPSF4LA6NMK7 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CPSF4LA6NMK7 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.72■■□□□ 1.07
CPSF4LA6NMK7 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.72■■□□□ 1.07
CPSF4LA6NMK7 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CPSF4LA6NMK7 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
CPSF4LA6NMK7 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CPSF4LA6NMK7 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
CPSF4LA6NMK7 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CPSF4LA6NMK7 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPSF4LA6NMK7 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.71■■□□□ 1.07
CPSF4LA6NMK7 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPSF4LA6NMK7 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPSF4LA6NMK7 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.71■■□□□ 1.07
CPSF4LA6NMK7 AC007029.1-201ENST00000604183 313 ntBASIC21.71■■□□□ 1.07
CPSF4LA6NMK7 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.71■■□□□ 1.07
CPSF4LA6NMK7 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
CPSF4LA6NMK7 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPSF4LA6NMK7 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CPSF4LA6NMK7 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CPSF4LA6NMK7 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
CPSF4LA6NMK7 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.7■■□□□ 1.06
CPSF4LA6NMK7 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.7■■□□□ 1.06
CPSF4LA6NMK7 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.7■■□□□ 1.06
CPSF4LA6NMK7 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms