Protein–RNA interactions for Protein: A1A4V9

CCDC189, Coiled-coil domain-containing protein 189, humanhuman

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC189A1A4V9 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC23.62■■□□□ 1.37
CCDC189A1A4V9 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC189A1A4V9 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC23.62■■□□□ 1.37
CCDC189A1A4V9 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC189A1A4V9 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC23.62■■□□□ 1.37
CCDC189A1A4V9 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC189A1A4V9 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CCDC189A1A4V9 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
CCDC189A1A4V9 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC189A1A4V9 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC189A1A4V9 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC189A1A4V9 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC189A1A4V9 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC189A1A4V9 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC23.61■■□□□ 1.37
CCDC189A1A4V9 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC189A1A4V9 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CCDC189A1A4V9 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.6■■□□□ 1.37
CCDC189A1A4V9 AC142381.3-201ENST00000568208 1670 ntBASIC23.6■■□□□ 1.37
CCDC189A1A4V9 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC189A1A4V9 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC189A1A4V9 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC189A1A4V9 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CCDC189A1A4V9 MIR639-201ENST00000384974 98 ntBASIC23.6■■□□□ 1.37
CCDC189A1A4V9 AL157400.5-201ENST00000507624 621 ntBASIC23.6■■□□□ 1.37
CCDC189A1A4V9 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC23.6■■□□□ 1.37
CCDC189A1A4V9 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC189A1A4V9 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC189A1A4V9 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC189A1A4V9 AC060814.1-201ENST00000554326 538 ntBASIC23.59■■□□□ 1.37
CCDC189A1A4V9 MIR3960-201ENST00000583311 91 ntBASIC23.59■■□□□ 1.37
CCDC189A1A4V9 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC23.59■■□□□ 1.37
CCDC189A1A4V9 MIR7108-201ENST00000614319 87 ntBASIC23.59■■□□□ 1.37
CCDC189A1A4V9 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC189A1A4V9 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC189A1A4V9 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC23.59■■□□□ 1.37
CCDC189A1A4V9 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC23.59■■□□□ 1.37
CCDC189A1A4V9 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC189A1A4V9 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC189A1A4V9 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC189A1A4V9 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC189A1A4V9 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CCDC189A1A4V9 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC23.58■■□□□ 1.37
CCDC189A1A4V9 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CCDC189A1A4V9 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
CCDC189A1A4V9 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CCDC189A1A4V9 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.36
CCDC189A1A4V9 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC189A1A4V9 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC23.57■■□□□ 1.36
CCDC189A1A4V9 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC23.57■■□□□ 1.36
CCDC189A1A4V9 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.57■■□□□ 1.36
CCDC189A1A4V9 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC23.57■■□□□ 1.36
CCDC189A1A4V9 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC189A1A4V9 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
CCDC189A1A4V9 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CCDC189A1A4V9 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CCDC189A1A4V9 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
CCDC189A1A4V9 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.56■■□□□ 1.36
CCDC189A1A4V9 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC189A1A4V9 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC23.55■■□□□ 1.36
CCDC189A1A4V9 AC092296.2-201ENST00000589470 999 ntBASIC23.55■■□□□ 1.36
CCDC189A1A4V9 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CCDC189A1A4V9 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.54■■□□□ 1.36
CCDC189A1A4V9 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC189A1A4V9 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC23.54■■□□□ 1.36
CCDC189A1A4V9 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
CCDC189A1A4V9 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC189A1A4V9 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
CCDC189A1A4V9 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC189A1A4V9 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC189A1A4V9 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
CCDC189A1A4V9 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
CCDC189A1A4V9 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC23.53■■□□□ 1.36
CCDC189A1A4V9 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC189A1A4V9 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC189A1A4V9 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC189A1A4V9 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC189A1A4V9 AC097639.1-201ENST00000565519 1891 ntBASIC23.52■■□□□ 1.36
CCDC189A1A4V9 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC189A1A4V9 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC23.52■■□□□ 1.36
CCDC189A1A4V9 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
CCDC189A1A4V9 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.52■■□□□ 1.36
CCDC189A1A4V9 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC23.52■■□□□ 1.36
CCDC189A1A4V9 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC189A1A4V9 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC189A1A4V9 SMPD5-203ENST00000639008 1464 ntBASIC23.51■■□□□ 1.35
CCDC189A1A4V9 MED17-227ENST00000640521 2047 ntTSL 5 BASIC23.51■■□□□ 1.35
CCDC189A1A4V9 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
CCDC189A1A4V9 ECEL1P2-201ENST00000461596 1295 ntBASIC23.51■■□□□ 1.35
CCDC189A1A4V9 MOB2-207ENST00000614710 705 ntTSL 5 BASIC23.51■■□□□ 1.35
CCDC189A1A4V9 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC23.5■■□□□ 1.35
CCDC189A1A4V9 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC189A1A4V9 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
CCDC189A1A4V9 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC189A1A4V9 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC23.5■■□□□ 1.35
CCDC189A1A4V9 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC189A1A4V9 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
CCDC189A1A4V9 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC189A1A4V9 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
CCDC189A1A4V9 TPT1-202ENST00000379055 948 ntTSL 2 BASIC23.49■■□□□ 1.35
CCDC189A1A4V9 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms