Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 AC069335.1-201ENST00000489972 472 ntBASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 AC009093.7-201ENST00000623853 1223 ntBASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 CROCCP1-201ENST00000426910 5675 ntBASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A3BPQ9Y5P4 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL4A3BPQ9Y5P4 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
COL4A3BPQ9Y5P4 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
COL4A3BPQ9Y5P4 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 ME2P1-201ENST00000426028 1970 ntBASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 CYP2T1P-202ENST00000641596 2535 ntBASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 HLA-J-203ENST00000494367 1087 ntBASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 IGHV3-62-201ENST00000520057 340 ntBASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 LINC01225-203ENST00000563550 1244 ntBASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 AC093028.1-201ENST00000622998 982 ntBASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 PCGF3-213ENST00000620529 1899 ntBASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
COL4A3BPQ9Y5P4 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 AC092364.2-201ENST00000596710 2692 ntBASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 PCDH8P1-201ENST00000428983 2773 ntBASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 KRT18P32-201ENST00000424695 1287 ntBASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
COL4A3BPQ9Y5P4 LINC01144-201ENST00000626198 1710 ntBASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms