Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 AC024909.3-201ENST00000611513 2257 ntBASIC13.36□□□□□ -0.27
FOXA2Q9Y261 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC13.36□□□□□ -0.27
FOXA2Q9Y261 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 ZNF259P1-201ENST00000407656 1365 ntBASIC13.35□□□□□ -0.27
FOXA2Q9Y261 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 SLC22A20-204ENST00000530038 1673 ntBASIC13.35□□□□□ -0.27
FOXA2Q9Y261 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 PGR-209ENST00000617858 2816 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 PRSS29P-201ENST00000440800 595 ntBASIC13.35□□□□□ -0.27
FOXA2Q9Y261 AC009947.1-201ENST00000444350 727 ntBASIC13.35□□□□□ -0.27
FOXA2Q9Y261 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 RPL13AP23-201ENST00000480739 586 ntBASIC13.35□□□□□ -0.27
FOXA2Q9Y261 SLC25A6P2-201ENST00000497974 877 ntBASIC13.35□□□□□ -0.27
FOXA2Q9Y261 AC087641.1-201ENST00000557561 1021 ntBASIC13.35□□□□□ -0.27
FOXA2Q9Y261 RIN3-211ENST00000557762 517 ntTSL 3 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 TCAP-202ENST00000578283 583 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA2Q9Y261 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC13.34□□□□□ -0.27
FOXA2Q9Y261 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 AC104109.2-201ENST00000602919 1418 ntBASIC13.34□□□□□ -0.27
FOXA2Q9Y261 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 PMS2P1-201ENST00000431037 1228 ntBASIC13.34□□□□□ -0.27
FOXA2Q9Y261 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 CD63-210ENST00000550776 870 ntTSL 5 BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 AC145285.3-201ENST00000564603 959 ntBASIC13.34□□□□□ -0.27
FOXA2Q9Y261 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 AC005412.3-201ENST00000580309 715 ntBASIC13.34□□□□□ -0.27
FOXA2Q9Y261 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 AC004790.2-201ENST00000623588 572 ntBASIC13.34□□□□□ -0.27
FOXA2Q9Y261 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA2Q9Y261 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC13.34□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms