Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 MIR1199-201ENST00000621445 119 ntBASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 AP003680.1-201ENST00000598970 3660 ntBASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ATG4AQ8WYN0 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 DBET-201ENST00000630918 3363 ntBASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 AC018712.1-201ENST00000455767 687 ntBASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 EMBP1-201ENST00000458200 901 ntBASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 AC108073.2-201ENST00000464002 357 ntBASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 AC105339.3-201ENST00000560043 636 ntBASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 ACTL9-202ENST00000612068 1252 ntBASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 AC148477.8-201ENST00000624298 468 ntBASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 AC012569.1-201ENST00000591191 1524 ntBASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 AC112504.1-201ENST00000623415 1841 ntBASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
ATG4AQ8WYN0 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ATG4AQ8WYN0 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC17.08■□□□□ 0.33
ATG4AQ8WYN0 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ATG4AQ8WYN0 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ATG4AQ8WYN0 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ATG4AQ8WYN0 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
ATG4AQ8WYN0 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ATG4AQ8WYN0 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
ATG4AQ8WYN0 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.08■□□□□ 0.33
ATG4AQ8WYN0 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
ATG4AQ8WYN0 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
ATG4AQ8WYN0 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 FAM197Y8-203ENST00000450145 560 ntBASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 AC004790.2-201ENST00000623588 572 ntBASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 AP005117.1-202ENST00000581724 1908 ntBASIC17.08■□□□□ 0.32
ATG4AQ8WYN0 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 AC092384.3-202ENST00000564646 2873 ntBASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms